CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 3
Query:   93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 3
Query:   93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 3
Query:   93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 108/142 (76.06%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 108/148 (72.97%), Postives = 129/148 (87.16%), Query Frame = 3
Query:   75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            M   +  PV++VQ FGRKKTA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +FAGVD+R+RV GGGH +QIYAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTLLV DPRRCEPKKFGG GARAR+QKSYR
Sbjct:    1 MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.333e-59
Identity = 107/142 (75.35%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.879e-59
Identity = 104/145 (71.72%), Postives = 130/145 (89.66%), Query Frame = 3
Query:   84 AKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            A+  P+++VQ FGRKKTA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ VKGGGH +Q+YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:    7 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.879e-59
Identity = 105/148 (70.95%), Postives = 130/148 (87.84%), Query Frame = 3
Query:   75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            M  A+  PV +VQ FGRKKTA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +FAGVD+RIRV GGGH +QIYAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTLLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:    1 MVKARKEPVNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.474e-58
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 3
Query:  168 GLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GLIKING PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.369e-54
Identity = 99/140 (70.71%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            ++SVQCFG+K  A AV +CK G+GLIK+NG P+ LV+PEILR K YEPIL+ G  +FAGVD+R+RV GGGH SQIYAIRQ+I+KA+VA+YQK+VDE SK E+K  L+ YDRTLLVADPRR EPKKFGG GARAR QKSYR
Sbjct:    1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140          
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS16_MOUSE1.575e-6076.7640S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN1.575e-6076.7640S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN1.575e-6076.7640S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU5.984e-6076.0640S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_DROME5.984e-6072.9740S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_HETFO1.333e-5975.3540S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_SPOFR3.879e-5971.7240S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_AEDAE3.879e-5970.9540S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_LUPPO1.474e-5896.5840S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_SCHPO8.369e-5470.7140S ribosomal protein S16 OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top