CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.208e-52
Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V+SVQ FGRKKTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH +QIYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+QKSYR
Sbjct:    5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.692e-52
Identity = 98/140 (70.00%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARFQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.692e-52
Identity = 98/139 (70.50%), Postives = 116/139 (83.45%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            +SVQ FG+KKTA AV + K G+GLIKING PI LV+PEILRFK YEP+ L+G  +F G+D+R++V GGGH SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    4 QSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.692e-52
Identity = 98/140 (70.00%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARFQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.592e-52
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +F+ +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.336e-51
Identity = 94/139 (67.63%), Postives = 117/139 (84.17%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            ++VQ FG+KK A AV  C +G+GLIK+NG P++L  PEILR K YEPILLLG  +FA VD+R++V GGGH SQ+YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct:    4 QAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.336e-51
Identity = 96/140 (68.57%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.631e-51
Identity = 94/138 (68.12%), Postives = 114/138 (82.61%), Query Frame = 3
Query:  105 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            SVQ FG+KKTA AV + K G+GLIK+NG PI LV+PEILRFK YEP+ L+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    5 SVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 92/140 (65.71%), Postives = 115/140 (82.14%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+QKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRYQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.633e-49
Identity = 90/137 (65.69%), Postives = 117/137 (85.40%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            VQ  G+K+TAVAV Y   G+GLIK+NG P+E ++P+ L+ K YEP+L++G+  F+ VD+R+RV+GGG  +QIYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   11 VQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147          
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS16_CAEEL1.208e-5269.2940S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_CANGA2.692e-5270.0040S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_CANAL2.692e-5270.5040S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_ASHGO2.692e-5270.0040S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_YEAST4.592e-5269.2940S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_NEUCR1.336e-5167.6340S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_KLULA1.336e-5168.5740S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_DEBHA6.631e-5168.1240S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_SACEX7.332e-5065.7140S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_DICDI1.633e-4965.6940S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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