CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METJA (30S ribosomal protein S9P OS=Methanocaldococcus jannaschii GN=rps9p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            G++K A+A    + G+G I+IN  PIEL+EP+  R K  EPILL G    + +D+ + VKGGG   Q+ A R +I KA+V F          KE++D  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    9 GKRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVKGGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHKPSRSTKGPRAKRQKSYR 136          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METTP (30S ribosomal protein S9P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps9p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V   G+KKTA+A    K G+G I+IN  P+E++EP + R K  EP+++     F+ VD+ + V GGG   Q  A+R ++A+ ++ +            +K+    YDR LLV+D R+ E KKFGG GARA++QKSYR
Sbjct:    4 VNSSGKKKTAIARATFKEGKGRIRINNVPLEIIEPALARMKMMEPVIMAAE-AFSSVDVDVSVMGGGVMGQADAVRTALARGILEW-------TGDAALKEAYAEYDRNLLVSDHRQKEKKKFGGLGARAKYQKSYR 132          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PYRKO (30S ribosomal protein S9P OS=Pyrococcus kodakaraensis GN=rps9p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            +Q  G++KTAVA    + G+G ++IN  P+E++EPEI RF   EP++L G    + VD+ ++V+GGG   Q  A R +IA+ALV +        +   +K+  ++YDRT+LV D RR EP K     +G RA+ QKSYR
Sbjct:    4 IQTAGKRKTAVARATIREGKGRVRINHKPVEIIEPEIARFTIMEPLILAGEEIVSRVDIDVKVEGGGFMGQAEAARVAIARALVEW-------TNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 3
Query:   75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            M+   +  ++ V   G++KT++A    K G G + IN  P+E ++ E+ + K  EP+LL+G      VD+R+ V GGG+ SQ  A+R +IA+ LV F+       +  E+K +   YDR +L  DPR+ EPKK+G   AR R+QKSYR
Sbjct:    1 MSQTLSDKIKIVVSSGKRKTSIARAVIKPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRWQKSYR 140          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METAC (30S ribosomal protein S9P OS=Methanosarcina acetivorans GN=rps9p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V+ V   G+ KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G    +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GARA++QKSYR
Sbjct:    2 VKVVNSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEW-------TNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKYQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            G++K A+A    + GRG + ING P+E+   E+ R K  EP+L+ G    + VD+R+RV+GGG   Q  A+R +IA+ LV F++         + +D+ S ++++   + +DRT+LV DPRR EP+K+    AR R+QKSYR
Sbjct:   11 GKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METMA (30S ribosomal protein S9P OS=Methanosarcina mazei GN=rps9p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            V+ +   G+ KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G+   +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GAR+++QKSYR
Sbjct:    2 VKVINSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGKDVVSGLDINVDVRGGGIVGQANAVRTAVARGIVEW-------TNDTTIRDNFAAYDRNLLVSDSRQKEAKNFGGPGARSKYQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METM7 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps9p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METM5 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps9p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSDIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            V   G+++TA+A      G G I+IN  P+EL+EP+ ++ K  EP++L G      +D+ + VKGGG  SQ+ A R ++ KA++ F         K E+K++ + YDRTLLV+D RR EP K     +G RAR QKSYR
Sbjct:    4 VHTVGKRRTAIARATATEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EILGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLLVSDARRTEPHKPSKSSKGPRARRQKSYR 134          
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS9_METJA7.640e-2345.1930S ribosomal protein S9P OS=Methanocaldococcus ja... [more]
RS9_METTP9.978e-2340.8830S ribosomal protein S9P OS=Methanosaeta thermoph... [more]
RS9_PYRKO1.702e-2241.7330S ribosomal protein S9P OS=Pyrococcus kodakaraen... [more]
RS9_DESK12.223e-2239.1930S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_METAC3.792e-2240.0030S ribosomal protein S9P OS=Methanosarcina acetiv... [more]
RS9_AERPE3.792e-2240.1430S ribosomal protein S9P OS=Aeropyrum pernix GN=r... [more]
RS9_METMA4.952e-2238.5730S ribosomal protein S9P OS=Methanosarcina mazei ... [more]
RS9_METM74.952e-2243.1730S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METM56.468e-2243.1730S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METVS1.103e-2141.7330S ribosomal protein S9P OS=Methanococcus vanniel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top