CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METMP (30S ribosomal protein S9P OS=Methanococcus maripaludis GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K ++K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMDLKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_META3 (30S ribosomal protein S9P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            V   G++KTA+A    K G+G I+IN  PIE+VEP+ +  K  EPI+L G     G+D+ I V GGG   Q+ A R ++ KA+V F           E+KD  V YDRT+L++D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRKTAIARATAKEGKGRIRINKKPIEIVEPKYINAKLMEPIILAG-DVVDGIDIDITVNGGGIVGQMDAARTALGKAIVEF-------TGDMELKDRFVHYDRTILISDARRTEPHKPSKSTKGPRAKRQKSYR 134          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_THESM (30S ribosomal protein S9P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps9p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 518
            +Q  G++K+AVA    K G G +++N  P+E++EPEI RF   EP+++ G      VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV D RR EP K     +G RA+ QKSYR
Sbjct:   12 IQTAGKRKSAVARATIKEGNGRVRVNYKPVEILEPEIARFTIMEPLVIAGEEILGKVDVDVKVEGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 143          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_ARCFU (30S ribosomal protein S9P OS=Archaeoglobus fulgidus GN=rps9p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            G++KTA A    K G+G ++IN  P+E+ +PE+ R K  EP L++ +     VD+ ++  GGG  +Q  A R +IA+AL+ F          +E++   + YDRTLLV D RR  PK  GGRGARAR Q SYR
Sbjct:   11 GKRKTATARAVIKPGKGRVRINSVPVEIHQPELARMKIMEP-LIIAKELAEKVDIEVKTWGGGFMAQAEAARTAIARALLEF-------SGDEELRKAFLEYDRTLLVNDVRRKLPKIQGGRGARARRQTSYR 135          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PYRAE (30S ribosomal protein S9P OS=Pyrobaculum aerophilum GN=rps9p PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/133 (43.61%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            G+KKTAVA    K G G ++ING P+EL   E+ R K  EP++L G      VD+ + V GGG+  Q  A+R ++A+ LVAF+Q        +E+K++  RYD  +L  DPRR E KK G + AR++ QK+YR
Sbjct:   18 GKKKTAVARAIIKPGIGRVRINGYPLELWPIEMARIKMSEPLILAG-ELAKKVDIDVNVSGGGYMGQAVAVRIAMARGLVAFFQ-------SQELKELYERYDPYMLKGDPRRTEHKKPGIKHARSKRQKAYR 142          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PICTO (30S ribosomal protein S9P OS=Picrophilus torridus GN=rps9p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            G++KTA+A    ++G G   ING PIEL   EILR K  EPI +LG  R   +D+ + V GGG+T Q  A R ++AKA++ +++   D   + EI+     YDR++LV D RR  PKK  G GARA+ QKSYR
Sbjct:    9 GKRKTAIARAIIRKGSGKFLINGYPIELYPIEILREKMLEPIRILG-DRSKEIDIDVNVHGGGNTGQADATRTAMAKAIIEYFK---DSDLEAEIR----AYDRSMLVNDVRRKMPKKPMGYGARAKRQKSYR 133          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_SULAC (30S ribosomal protein S9P OS=Sulfolobus acidocaldarius GN=rps9p PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  117 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            + R+K+A A  Y K G G + +N  PIE++  E++R+K  EP++L G    + ++ RI  +GGG   Q  A R ++A+ALV F        + KE+ +I   YDRT+L  DPR+ E +K+    AR   QK+YR
Sbjct:   12 YARRKSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKF-------TNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 138          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_SULTO (30S ribosomal protein S9P OS=Sulfolobus tokodaii GN=rps9p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  117 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            + R+K A A  Y   G+G + +N  P+E++  E++R K  EP+LL G    + +D +I V+GGG   Q  A R ++A+ALV F          KE+++I   YDRT+L  DPR+ E +K+    AR   QK+YR
Sbjct:   11 YARRKMARARCYITPGKGRVFVNDIPLEIIPMEVVRMKIMEPLLLAGEKISSSIDAKIYVEGGGVMGQADAARMALARALVKF-------TGSKELEEIYKVYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 137          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_SULSO (30S ribosomal protein S9P OS=Sulfolobus solfataricus GN=rps9p PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  123 RKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            R+KTA A  Y   G+G + +N  PIEL+  E++R K  EP+LL G    + +D +I   GGG   Q  A R ++A+ALV F          KE++ I   YDRT+L  DPR+ E +K+    AR   QKSYR
Sbjct:   13 RRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSARRWRQKSYR 137          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CHLL2 (30S ribosomal protein S9 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 53/140 (37.86%), Postives = 72/140 (51.43%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G + IN  P+E   + E+ R KA  P+ L    R    D+++ V+GGG T Q  A+   IA+AL  F     DE  +  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFKDEVRRSKALRPLALT--ERTEEFDIKVNVQGGGITGQSGAVSLGIARALTEF-----DETVRPILKT------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS9_METMP1.103e-2142.4530S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_META32.458e-2143.8830S ribosomal protein S9P OS=Methanococcus aeolicu... [more]
RS9_THESM4.192e-2140.2930S ribosomal protein S9P OS=Thermococcus sibiricu... [more]
RS9_ARCFU5.475e-2142.8630S ribosomal protein S9P OS=Archaeoglobus fulgidu... [more]
RS9_PYRAE1.220e-2043.6130S ribosomal protein S9P OS=Pyrobaculum aerophilu... [more]
RS9_PICTO1.220e-2045.8630S ribosomal protein S9P OS=Picrophilus torridus ... [more]
RS9_SULAC1.947e-1838.0630S ribosomal protein S9P OS=Sulfolobus acidocalda... [more]
RS9_SULTO2.543e-1838.0630S ribosomal protein S9P OS=Sulfolobus tokodaii G... [more]
RS9_SULSO4.338e-1840.9130S ribosomal protein S9P OS=Sulfolobus solfataric... [more]
RS9_CHLL25.488e-1337.8630S ribosomal protein S9 OS=Chlorobium limicola (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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