CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_SYNFM (30S ribosomal protein S9 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            G++KTAVA  + K G G + IN   IE  ++ E  +   Y+P++L G   F  +D+ + V GGG + Q  AIR  I+KAL+ F           E +++L R     L  D R  E KK+G R ARARFQ S R
Sbjct:   10 GKRKTAVARVWLKPGSGSVTINKRTIEEYIDRETSKMVIYQPLVLTGT--FGKLDVTVNVLGGGGSGQAGAIRHGISKALLEF---------NPEFREVLKR--AGFLTRDSRVKERKKYGRRSARARFQYSKR 130          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PELLD (30S ribosomal protein S9 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G + IN  P+E     E+ R  A  P++L    +    D+++ VKGGG + Q  A+   IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFRDEVKRLHALRPLVLT--EKTEDFDIKVNVKGGGLSGQSGAVSLGIARALTEF-----DEAARAVLKQ------ERLLTRDPRMVERKKFGRKKARKSFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CHLTE (30S ribosomal protein S9 OS=Chlorobium tepidum GN=rpsI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P+ +  +      D+ I VKGGG T Q  A+  +IA+ALV F     DE  +  +     R DR LL  DPR  E KK+G + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLAVAEKQN--DFDITINVKGGGLTGQSGAVSLAIARALVEF-----DESIRAAL-----RPDR-LLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CHLPD (30S ribosomal protein S9 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G + IN  P E     E+ R +A  P+ L    +    D+++ V GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGRVIINKLPAEEYFRDEVKRQQALRPLALT--EKMEDFDIKVNVHGGGVSGQTGAVSLAIARALTEF-----DESARAVLKK------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PELPB (30S ribosomal protein S9 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G + +N  PIE   + E  R +A  P+++    R    D++I V+GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARAFMIPGKGRVIVNKLPIEEYFKDEFKRQQALRPLVIT--ERAEEFDIKINVQGGGVSGQSGAVSLAIARALTEF-----DETARVILKT------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_GRAFK (30S ribosomal protein S9 OS=Gramella forsetii (strain KT0803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 49/141 (34.75%), Postives = 74/141 (52.48%), Query Frame = 3
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            +E +   GR+KTAVA  Y   G+G I +N   + +      L +K  +P++L         D++I V GGG T Q  AIR ++++A+VA     +DE++   +K         LL  DPR  E KK+G + AR +FQ S R
Sbjct:    1 MEVIHKIGRRKTAVARVYVSEGKGNITVNKKDLKDYFTTGTLLYKVNQPMMLTENE--GNFDVKINVYGGGITGQAEAIRLALSRAMVA-----LDEENHGALK------PEGLLTRDPRMVERKKYGQKKARKKFQFSKR 128          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CHLP8 (30S ribosomal protein S9 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P++   +      D+++ VKGGG T Q  A+  +IA+ALV F     DE  +  ++         LL  DPR  E KK+G + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLVTAEKQD--EFDIKVNVKGGGLTGQSGAVCLAIARALVEF-----DESIRPTLR------TERLLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CHLCH (30S ribosomal protein S9 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            E +   GR+KT+VA  +   G+G + +N  P+E   + E  R +A  P+ L    +    D++I V+GGG + Q  A+  +IA+AL          +S + ++ +L R +R LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARAFLTPGKGTVTVNKRPVEEYFKDEFKRQQALRPLTLC--EKAEEFDVKINVQGGGLSGQSGAVSLAIARALT---------ESDEALRAVL-RTER-LLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_METI4 (30S ribosomal protein S9 OS=Methylacidiphilum infernorum (isolate V4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  108 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEIL-RFKAYEPI-LLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            +Q  GR+KTA A    K G+G + ING  +E   P  + R++ ++P+ ++ G  +F   D+  + +GGG   Q  A++ ++++AL+ +   Y     K+            LL  DPR  E KK G  GAR RFQ S R
Sbjct:   12 IQATGRRKTATATVILKPGKGEVSINGKDLEFYFPTFVHRYEVFKPLEVIEGTKKF---DIIAKARGGGLMGQAQALKLAVSRALIKYDPSYRSLLKKE-----------GLLTRDPRMKERKKTGQPGARKRFQFSKR 136          
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_PETMO (30S ribosomal protein S9 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  120 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVE----PEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            GR+KTAVA  + + G G IKING   + LVE     E+   +A +P+ +   +     D+ IRV GGG + Q  AIR  IA+AL+++     DE  +  +K         LL  DPR  E KK+G R AR R Q S R
Sbjct:   11 GRRKTAVARVHLRPGNGKIKINGKEYKSLVEYLRGNEVWEIEALKPLTVTSTN--GQFDLVIRVNGGGLSGQAGAIRLGIARALLSY-----DESFRPILK------KEGLLTRDPREVERKKYGLRKARKRAQFSKR 135          
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS9_SYNFM7.167e-1338.8130S ribosomal protein S9 OS=Syntrophobacter fumaro... [more]
RS9_PELLD2.724e-1235.7130S ribosomal protein S9 OS=Pelodictyon luteolum (... [more]
RS9_CHLTE4.646e-1237.8630S ribosomal protein S9 OS=Chlorobium tepidum GN=... [more]
RS9_CHLPD4.646e-1235.7130S ribosomal protein S9 OS=Chlorobium phaeobacter... [more]
RS9_PELPB7.924e-1236.4330S ribosomal protein S9 OS=Pelodictyon phaeoclath... [more]
RS9_GRAFK1.765e-1134.7530S ribosomal protein S9 OS=Gramella forsetii (str... [more]
RS9_CHLP81.765e-1135.0030S ribosomal protein S9 OS=Chlorobaculum parvum (... [more]
RS9_CHLCH3.933e-1135.7130S ribosomal protein S9 OS=Chlorobium chlorochrom... [more]
RS9_METI45.136e-1133.0930S ribosomal protein S9 OS=Methylacidiphilum infe... [more]
RS9_PETMO8.761e-1139.1330S ribosomal protein S9 OS=Petrotoga mobilis (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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