CK938701

Overview
NameCK938701
Unique NameCK938701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS9_CYTH3 (30S ribosomal protein S9 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/142 (35.92%), Postives = 73/142 (51.41%), Query Frame = 3 
Query:   99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELV-EPEILRFKAYEPILLLGRHRFAG-VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518
            +E +   GR+KT+VA  Y + G+G I +NG   +   + E L+     P+ L+     AG  D+ + V+GGG T Q  AIR  IA+ALV      V+ + K  ++         L+  D R  E KK+G R AR RFQ S R
Sbjct:    1 MEVLNAIGRRKTSVARVYLQSGKGSIVVNGLDFKTYFKTEPLQISVESPLNLVAE---AGKYDINVNVQGGGVTGQAEAIRLGIARALV-----LVNSEFKSPLR------KEGLMTRDSRMVERKKYGKRKARKRFQFSKR 128
The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS9_CYTH38.761e-1135.9230S ribosomal protein S9 OS=Cytophaga hutchinsonii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bp
GGGGACTGATAGTCATTTTAGGGTTTCTCTGTGTGTCGCGCGCGCGCTAC
CCTCATAGCAAACCCTAACAGAAAATGGCGACAGCAAAAGCAGGTCCAGT
GGAATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTT
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATCCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCCAGAAGAGTTACCGTTGAGCGGGAATGCAAGGAAGCGAAACGAAACG
GCTTTTCGTTTTGCTATTTTAGTTTGTTTGTTTTACTTTTTTATGAAATT
TTGGTTATTTTGAGACTGGATCATTAAATGTTAGTAGTTTATGAGATATT
AAGGCTTTGGTGAGGCGGTAATGAATTACTGTTGAAGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top