CK938700

Overview
NameCK938700
Unique NameCK938700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938700 vs. ExPASy Swiss-Prot
Match: CARP1_CANPA (Candidapepsin-1 OS=Candida parapsilosis GN=SAPP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 60/207 (28.99%), Postives = 94/207 (45.41%), Query Frame = 3
Query:  267 LRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN--CYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF------QEISVGNAVPVWYN----MVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVT 848
            LR+  D+  ++L N     Y  ++ +G+  Q+ TVI DTGSS+ WV  +N  C   V C                 G + +I+YG G+ + G +  D+V +  + +  Q+  + T+        +   GILG+G+       + S     P + N    + KQG I+   +S +L  N    E G I+FGGVD   Y GK     VT
Sbjct:   58 LREKRDSISLSLINE-GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ-------TSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYL--NSPSAETGTIIFGGVDNAKYSGKLVAEQVT 254          
BLAST of CK938700 vs. ExPASy Swiss-Prot
Match: CTSD_NANOT (Probable aspartic-type endopeptidase CTSD (Fragment) OS=Nannizzia otae (strain CBS 113480) GN=CTSD PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 51/171 (29.82%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  372 IFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGY-WQFNMGD 881
            + DTG+S  WV  ++C  S +C  H               E   + YGTG +AG    D++      + D  F  AT      FM    DGILG+G Q+ S      V   +++Q L++  +    L RN      G+I FG VD + + G+  Y  V   GY W+  + D
Sbjct:    2 LIDTGASRTWVFGSDCT-SKSCGAHNTFGKEDSKTIKVTDEKWDVAYGTGKVAGVIVNDTMSFAGFEL-DTPFGSATTASD-DFMSYPMDGILGIGPQD-SKAKVPTVIQLLMQQKLLKSNIIGINLQRNSDGATDGQITFGDVDKSKFSGELAYSNVVSGGYQWEIAVDD 168          
BLAST of CK938700 vs. ExPASy Swiss-Prot
Match: CARP_CRYPA (Endothiapepsin OS=Cryphonectria parasitica GN=EAPA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 3
Query:  312 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIAGFFSY-DSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEISVGNAV--PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV-TQKGYWQF 869
            +D  Y   + IGTP Q   + FDTGSS+LWV S+    S                   +G + SI YG G+ +    Y D+V VG L V  Q  +E+ ++   +F   +  DG+LGL F  ++  +      +++  K  L   PVF+  L  +      G   FG +D   Y G  TY  V T++G+W++
Sbjct:  102 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYTAVSTKQGFWEW 286          
The following BLAST results are available for this feature:
BLAST of CK938700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
CARP1_CANPA1.453e-1128.99Candidapepsin-1 OS=Candida parapsilosis GN=SAPP1 P... [more]
CTSD_NANOT4.228e-1129.82Probable aspartic-type endopeptidase CTSD (Fragmen... [more]
CARP_CRYPA5.522e-1130.37Endothiapepsin OS=Cryphonectria parasitica GN=EAPA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_D12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938700 ID=CK938700; Name=CK938700; organism=Citrus sinensis; type=EST; length=882bp
GGGGATTCTTTCGTTTGCGTTACGAGTCGACTTTGATCTTTCAAGTTTCG
GCGATCATGGGAACCAAAATCAGAGCAGTACCGTTGTCTTTGTTCCTCTC
AAGCCTTTTGTTTTCTCTGGTGGCTTCTGTGTCCAATGATGGATTGGTTA
GAATAGGGCTGAAAAAGATGAAATTGGATCCCAACAACCGGCTTGCTGCC
CGGCTGGAGTCCGAGCATGGCGAGGCATTGAGAGCTTCTGTTAAGAAATA
CGGATTTCCTAATAATCTCCGAGACTCTGAGGATACTGATATTGTTGCAT
TGAAAAACTATATGGATGCTCAGTACTACGGTGAGATTGGTATTGGTACT
CCTCCACAGAAGTTCACTGTAATCTTTGACACAGGTAGCTCTAATTTGTG
GGTGCCTTCAACTAACTGTTATTTCTCGGTTGCTTGTTACTTTCATTCCA
AGTACAAGTCAAGCCAATCCAGTACATACAAGAAGAATGGTGAATCTGCT
TCTATTCAGTATGGTACTGGAGCTATTGCTGGTTTCTTTAGTTATGACAG
TGTCAAAGTTGGTGACCTGGTTGTCAAAGATCAGGAATTTATTGAGGCAA
CCAGGGAGCCTGGTGTCACATTTATGGTGGCCAAGTTTGATGGCATATTA
GGACTTGGGTTTCAAGAGATTTCAGTTGGAAATGCTGTCCCAGTTTGGTA
CAACATGGTCAAACAAGGCCTAATTCAGGATCCAGTTTTTTCATTTTGGC
TTAACCGCAATCAACAGGAAGATGAAGGTGGTGAAATTGTCTTCGGTGGT
GTTGATCCAAATCATTACAAAGGCAAGCACACTTATGTTCCTGTGACGCA
GAAAGGCTACTGGCAGTTTAACATGGGTGACN
back to top