CN187815

Overview
NameCN187815
Unique NameCN187815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:925..1744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.556e-56
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 VGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKE+TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKELTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  268 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.118e-55
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+ESGPSIVHRKCF
Sbjct:   53 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.118e-55
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.118e-55
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGMEAAGIHETTYNSIMKCDVDIRKDLYG IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGKIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  268 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.491e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            I MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  268 IEMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.491e-55
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 IGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.550e-55
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+ GIHETT+NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  269 IGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CN187815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ACT11_ARATH6.556e-5696.33Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT3_SOLTU8.563e-5696.33Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT1_PEA8.563e-5697.25Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT_PINCO1.118e-5597.25Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT_COLSC1.118e-5596.33Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT1_TOBAC1.118e-5597.25Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT2_PEA1.908e-5596.33Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT3_SOYBN2.491e-5598.17Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT1_ARATH2.491e-5596.33Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT3_PEA5.550e-5595.41Actin-3 OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187815 ID=CN187815; Name=CN187815; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTATTGAAAGCTCTCAAACAAGTATTAAATATATTTTAAC
CCCTAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAA
TAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTC
AAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTC
ATCTCCAGCTACAAACATCCTACTTAAAATAAAAAAAAGGAAAAAAAAGA
AAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGATGGTTG
AGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAAC
ATCAATATCGAGATATGCCTCCTTCAATGGCCCCATCCTTAGCACTTCTC
CATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAA
TGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTT
CCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCC
ACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAA
ACACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCT
TGGAGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAATACCAGGGA
ACATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTA
ATATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACC
AGCAGCTTCCATTCCGATGA
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