CN187815

Overview
NameCN187815
Unique NameCN187815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +G ++ G+     +SI KCD DI+K L+G IVLSGG+T+F G+ DR+ KE+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  269 LGSQSPGLSNMVSSSITKCDTDIQKILFGEIVLSGGTTLFHGLDDRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF 377          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +G++  G+ +    SI KCD DI+K LYG IVLSGG+T+F G+ DR+ +E+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S++ R+CF
Sbjct:  269 LGIQNPGLSKMVSCSITKCDADIQKTLYGEIVLSGGTTLFQGLDDRLLRELEQLASKGTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTSADFKEFGTSVIQRRCF 377          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +G+   GI +   NSIM CD DI+++L+  IVLSGG+TMFPG+ DR+ KE+  LA     IK+ A  +R YS WIGGS++ S++TF+QMW++  ++ E G  +V RKCF
Sbjct:  268 LGIHDLGISKMVCNSIMNCDTDIQENLFAEIVLSGGTTMFPGLQDRLLKELEDLAFEGTPIKITASSDRCYSAWIGGSVMTSMTTFKQMWVTAEDFKEYGAFVVQRKCF 376          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 50/109 (45.87%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +G+ + G+ +   +SIMKCD DI+  LY +IVLSGG+T+ PG+ +R+ KE+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  268 LGIHSPGLSKMVSSSIMKCDTDIQNKLYADIVLSGGTTLLPGLEERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 376          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  316 GNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  316 GNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  316 GNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  316 GNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  319 GNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = -3
Query:  495 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 815
            G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  319 GNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
The following BLAST results are available for this feature:
BLAST of CN187815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ACTT2_HUMAN1.861e-2648.62Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ACTT2_BOVIN1.861e-2647.71Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ACTT1_MOUSE4.145e-2648.62Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ACTT1_HUMAN4.145e-2645.87Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ACL6B_RAT9.234e-2650.00Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE9.234e-2650.00Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN9.234e-2650.00Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN9.234e-2650.00Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6A_MOUSE1.021e-2447.27Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6A_MACFA1.021e-2447.27Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187815 ID=CN187815; Name=CN187815; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTATTGAAAGCTCTCAAACAAGTATTAAATATATTTTAAC
CCCTAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAA
TAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTC
AAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTC
ATCTCCAGCTACAAACATCCTACTTAAAATAAAAAAAAGGAAAAAAAAGA
AAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGATGGTTG
AGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAAC
ATCAATATCGAGATATGCCTCCTTCAATGGCCCCATCCTTAGCACTTCTC
CATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAA
TGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTT
CCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCC
ACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAA
ACACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCT
TGGAGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAATACCAGGGA
ACATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTA
ATATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACC
AGCAGCTTCCATTCCGATGA
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