CN187815

Overview
NameCN187815
Unique NameCN187815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSJ (Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = -3
Query:  495 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI-----------TALAPSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHRKC 818
            I +E  G+ +  +  I + D+D R  LY +IVLSGGSTM+PG+  R+ KE+                  +++++  PP RK+ V++GG++LA  +    + WI++ EY E G + + RKC
Sbjct:  268 IDVEGDGMADMAFRCIQEMDIDNRMTLYQHIVLSGGSTMYPGLPSRLEKEMLDRYLDVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDSPEFWITRQEYQEEGLACL-RKC 386          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSI (Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = -3
Query:  495 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI-----------TALAPSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHRKC 818
            I +E  G+ +  +  I + D+D R  LY +IVLSGGSTM+PG+  R+ KE+                  +++++  PP RK+ V++GG++LA  +    + WI++ EY E G + + RKC
Sbjct:  268 IDVEGDGMADMAFRCIQEMDIDNRMTLYQHIVLSGGSTMYPGLPSRLEKEMLDRYLDVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWITRQEYQEEGLACL-RKC 386          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  507 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS----SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 818
            +G    G+    + ++ K    +R  L   +VL+GGST+FPG  +RM+ E+ A        +++  +VA P R  +VW GGS++ASL++FQ  W+++  Y E GP +V
Sbjct:  234 LGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLV 341          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: CT134_HUMAN (Putative uncharacterized actin family protein C20orf134 OS=Homo sapiens GN=C20orf134 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = -3
Query:  504 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP----SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 818
            +G    G+    + ++ K    +R  L   +VL+GGST+FPG A+R+ KE+ A       ++++  +VA   R  +VW GGS++ASL +FQ+ WI++  Y E G  +++
Sbjct:  133 LGQAEQGLPALAFRALQKMPKTLRTRLADTVVLAGGSTLFPGFAERLDKELEAQCRRHGYAALRPHLVAKHGRGMAVWTGGSMVASLHSFQRRWITRAMYQECGSRLLY 241          
The following BLAST results are available for this feature:
BLAST of CN187815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ARP2_ORYSJ1.806e-1334.17Actin-related protein 2 OS=Oryza sativa subsp. jap... [more]
ARP2_ORYSI1.806e-1334.17Actin-related protein 2 OS=Oryza sativa subsp. ind... [more]
ARP3_RAT2.359e-1336.61Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]
ARP3_PONAB2.359e-1336.61Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE2.359e-1336.61Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN2.359e-1336.61Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_CHICK2.359e-1336.61Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP3_BOVIN2.359e-1336.61Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
CT134_MOUSE4.024e-1335.19Putative uncharacterized actin family protein C20o... [more]
CT134_HUMAN5.255e-1333.94Putative uncharacterized actin family protein C20o... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187815 ID=CN187815; Name=CN187815; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTATTGAAAGCTCTCAAACAAGTATTAAATATATTTTAAC
CCCTAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAA
TAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTC
AAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTC
ATCTCCAGCTACAAACATCCTACTTAAAATAAAAAAAAGGAAAAAAAAGA
AAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGATGGTTG
AGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAAC
ATCAATATCGAGATATGCCTCCTTCAATGGCCCCATCCTTAGCACTTCTC
CATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAA
TGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTT
CCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCC
ACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAA
ACACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCT
TGGAGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAATACCAGGGA
ACATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTA
ATATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACC
AGCAGCTTCCATTCCGATGA
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