CN187815

Overview
NameCN187815
Unique NameCN187815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:925..1744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP4_CANAL (Actin-related protein 4 OS=Candida albicans GN=ARP4 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = -3
Query:  519 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 800
            GI +   +++   D+D+R  L  NI+++GG ++   + +R+  E++   P  +KI++ A     ER    WIGGS+LASL TF QMW++K EY+E G
Sbjct:  364 GISQLISHTLSNIDIDLRASLANNIIVTGGVSLISQLTERLYLELSNNNPG-LKIRLHAVGNSTERINQAWIGGSVLASLGTFHQMWVTKEEYNEVG 459          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  507 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 776
            +I  C +D+RK LY NIVLSGGSTMF     R+ +++ ++                + + + V++  +++ +VW GGS+LA  + F+    +K +Y+E GP IV
Sbjct:  337 TIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNRIAQSELLSGTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAEFKGYCHTKKDYEEYGPEIV 440          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  525 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 776
            S+  C++ +R  L  +++  GG+T++PG   R+ +E+     SS K  V     R +SVW+G S++A LST+Q  W+S+ EY E
Sbjct:  279 SVESCEISLRPLLVSHVMACGGNTLYPGFTKRLFRELMGDHVSSTKATVWEGSNRNFSVWLGASVVAHLSTYQSEWMSREEYGE 362          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  306 LHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = -3
Query:  510 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 797
            +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  306 LHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
The following BLAST results are available for this feature:
BLAST of CN187815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ARP4_CANAL4.449e-1238.14Actin-related protein 4 OS=Candida albicans GN=ARP... [more]
ARP3_YEAST9.911e-1233.65Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ACTL8_HUMAN1.294e-1136.90Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ARP3_ORYSJ2.208e-1133.93Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI2.208e-1133.93Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187815 ID=CN187815; Name=CN187815; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTATTGAAAGCTCTCAAACAAGTATTAAATATATTTTAAC
CCCTAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAA
TAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTC
AAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTC
ATCTCCAGCTACAAACATCCTACTTAAAATAAAAAAAAGGAAAAAAAAGA
AAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGATGGTTG
AGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAAC
ATCAATATCGAGATATGCCTCCTTCAATGGCCCCATCCTTAGCACTTCTC
CATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAA
TGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTT
CCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCC
ACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAA
ACACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCT
TGGAGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAATACCAGGGA
ACATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTA
ATATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACC
AGCAGCTTCCATTCCGATGA
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