CN187815

Overview
NameCN187815
Unique NameCN187815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:925..1744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTB1_TAKRU (Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  267 LGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_MOUSE (Actin, aortic smooth muscle OS=Mus musculus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_HUMAN (Actin, aortic smooth muscle OS=Homo sapiens GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  268 LGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 96/109 (88.07%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            +GME++GIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  268 LGMESSGIHETTYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN187815 vs. ExPASy Swiss-Prot
Match: ACT2_HALRO (Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -3 
Query:  492 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 818
            IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  270 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 378
The following BLAST results are available for this feature:
BLAST of CN187815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ACTB1_TAKRU1.974e-5288.99Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba... [more]
ACTA_RAT1.974e-5288.99Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT1.974e-5288.99Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]
ACTA_MOUSE1.974e-5288.99Actin, aortic smooth muscle OS=Mus musculus GN=Act... [more]
ACTA_HUMAN1.974e-5288.99Actin, aortic smooth muscle OS=Homo sapiens GN=ACT... [more]
ACTA_CHICK1.974e-5288.99Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACTA_BOVIN1.974e-5288.99Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT4_ARTSX1.974e-5288.99Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO1.974e-5288.07Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT2_HALRO1.974e-5288.99Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187815 ID=CN187815; Name=CN187815; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTATTGAAAGCTCTCAAACAAGTATTAAATATATTTTAAC
CCCTAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAA
TAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTC
AAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTC
ATCTCCAGCTACAAACATCCTACTTAAAATAAAAAAAAGGAAAAAAAAGA
AAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGATGGTTG
AGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAAC
ATCAATATCGAGATATGCCTCCTTCAATGGCCCCATCCTTAGCACTTCTC
CATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAA
TGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTT
CCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCC
ACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAA
ACACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCT
TGGAGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAATACCAGGGA
ACATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTA
ATATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACC
AGCAGCTTCCATTCCGATGA
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