CK938644

Overview
NameCK938644
Unique NameCK938644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_CAEEL (60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            M ++K   LR + K  L  +L + K ELA LRV+KVTGGA +KLSKI+VVR +IA++LTVI+Q QK  LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ +     +RK+A+K
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_THEPA (60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.168e-24
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            M +++V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+ V
Sbjct:    1 MEKLRVFELREKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYALLV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL36_THELE (60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.993e-24
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 424
            M +++V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:    1 MEKLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYAL 121          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_DICDI (60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.399e-24
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 2
Query:   68 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAY--KNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            + K  ELRTK+KT LL  LK+L+ EL+ LRVA+V    P+KL+KI  VR +IA+VLTV +Q QK  LR  Y  K+   +P DLR KKTRAIRRRLT  Q+ + T R  K    FP R +A+K
Sbjct:    4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFAVK 125          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_BABBO (60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.399e-24
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            M ++KV+ELR K+  +LL QL+DLK E A +RV KVT  + +KLS+I V+R +IA+VLTV +Q+++   R+ Y     +PL++RPK TRA RR LT  Q  LKT +++K+   FP RKYA+ V
Sbjct:    1 MEKIKVYELRNKTDAELLKQLEDLKQEYASMRVQKVTVTSTSKLSQIGVIRKAIAKVLTVYNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYALLV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_THEAN (60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   68 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 424
            +++V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   22 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140          
The following BLAST results are available for this feature:
BLAST of CK938644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_CAEEL9.556e-2751.6460S ribosomal protein L35 OS=Caenorhabditis elegan... [more]
RL35_THEPA1.168e-2450.4160S ribosomal protein L35 OS=Theileria parva GN=RP... [more]
RL36_THELE1.993e-2450.4160S ribosomal protein L35 OS=Theileria lestoquardi... [more]
RL35_DICDI3.399e-2452.4660S ribosomal protein L35 OS=Dictyostelium discoid... [more]
RL35_BABBO3.399e-2448.7860S ribosomal protein L35 OS=Babesia bovis GN=RPL3... [more]
RL35_THEAN7.572e-2450.4260S ribosomal protein L35 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938644 ID=CK938644; Name=CK938644; organism=Citrus sinensis; type=EST; length=651bp
GGGGGACATAAGTCTTCTTCTTCTTCGCACACTGACAGAAAGAGTCGAAT
AACCAGCAGCCATGGCAAGAGTCAAGGTTCATGAACTGCGGACCAAATCC
AAGACGGATTTATTGAACCAGTTGAAAGATCTGAAAGCGGAGCTCGCTCT
TCTGCGGGTCGCCAAAGTCACCGGTGGCGCGCCCAATAAGCTTTCCAAAA
TTAAAGTGGTGAGGCTGTCGATTGCCCAAGTGTTGACTGTGATATCGCAG
AAGCAGAAGGCGGCTTTGAGAGAAGCATATAAGAACAAGAAGTTTTTGCC
ACTTGATCTTCGTCCCAAGAAGACCAGAGCTATCCGAAGGCGCCTCACCA
AGCATCAGGCATCTTTGAAGACTGAACGTGAGAAGAAGAGGGAAATGTAC
TTTCCAATGAGGAAATACGCCATTAAGGTGTAAGATCAAATTGAATTGGG
AAGGAGACAATGATGTTAAACTTGTCAAATGCTATCAAAGATTTTTTTGT
TCTGTTGAATTTTAAGTTTAGTTTTTCTTATCTTCCATTTGTGTTACTAG
TATGGATTTTGGATTTCGATGAGAGTATTCAGGTTTTAATTCTATATACT
TGAAGGTTTGGTCTCATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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