CN187804

Overview
NameCN187804
Unique NameCN187804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187804 vs. ExPASy Swiss-Prot
Match: NDUV2_NEUCR (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = -2 
Query:  480 IEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRRG----EKLP-PGTQNPKRIKSGPEGGNTTLLSEPKPP 794
            I  A+ +HLG+K+ E T DGLF+  E+EC+G C NAPM+ + D          +Y+ED+TP+ + +++  L+       K P PG Q+ ++       G T+L SEP  P
Sbjct:  158 IVKAIKEHLGIKQGETTPDGLFTFIEVECLGACANAPMVQIND----------DYFEDLTPETIKQVLSALKESVTDVSKAPQPGPQSGRQTCEN-AAGLTSLTSEPYGP 256
The following BLAST results are available for this feature:
BLAST of CN187804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NDUV2_NEUCR1.237e-1136.36NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005A13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187804 ID=CN187804; Name=CN187804; organism=Citrus sinensis; type=EST; length=798bp
GGGCGCTTTTGACAAAGTGAGTTTTTGATAAGTTTTCTGAAACCAAACCA
CCTGTACATTCTCTATTCCCCCACCTAAGCTTCCAGTACTTTTGTCTGGA
GTTTCATCAAAGAGCACCAAAATAAAGCTCCCCAGAAGATAAAAAACACT
TCCAGTCACCAACTCCCATCCATCATTTTCATCATATTACACATTTTTAT
GCATCACCATAAATTCAAGATGAGCATTTAAGTTTTTTTTTTTTTTTTTT
AAGAAAAAGGAAAATAAAACTCGAGTAGTCATCTCACTTGAAATAAGATG
GGGAGTTTATATAACTGAACATCCACCAGAAGCCAAAACTGGCAGGTACA
AAAAATTGTTGAGTTGAACCAATTAAAACCAAAAAAAATAAAACCTAGGC
AAGCCTGAAACATCCAAGCTTTGCATTATTGGAGATGACATCTGCCCAAA
CTTTAGCAGGCATCCAGATCCCGGCATGGAGGAGGTTTTGGTTCACTTAG
CAAAGTTGTATTCCCTCCTTCCGGCCCAGACTTAATGCGCTTTGGATTTT
GCGTGCCGGGCGGTAGCTTCTCCCCCCTCCTTAACATTTCAACTATCTCA
ACAACTCGTTTCGGAGTGACATCTTCATAATAATTGTAAGTATATCCTTC
AGATCCATTGGAGTAATCAGCCACTGTAATCATAGGAGCGTTTACACAGC
ATCCCATGCATTCCATTTCTCCAACAGAGAACAAGCCATCCTTAGTTACT
TCATTGCGCTTCACGCCCAAGTGTTTCAGTAAGGCATCTTCAATTTCT
back to top