CK938637

Overview
NameCK938637
Unique NameCK938637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 53/181 (29.28%), Postives = 80/181 (44.20%), Query Frame = 2
Query:   14 KEGSKGRISPYDSVLYGLYREXXQDEALEHLKQMEKLF--PRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 550
            K+G    +  Y+ +L+ L        AL  L  M ++   P  +  +  I G    G +E  K   D+ ++ G  P+VV Y  +I  Y     + +A E+ KEMT  G LP   T+N+++ G C  G    A  L++E      RG  P    YS L+  L   G    A  ++  MV KG
Sbjct:  285 KDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEME---SRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP401_ARATH (Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   50 SVLYGLYREXXQDEAL-EHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL-PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 598
            ++L GL+ +    E + E L  MEK    P ++  +  I  F    D E  +R  +QM E+G  P V  Y  +I AYC    + EA +L K+M  H  + P    +N +++   + GN G AL L EE    + R   P    Y+ L K L EK   ++   L+ +MV +   P+ +T   L+  LS
Sbjct:  550 NMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR---PNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLS 733          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PPR67_ARATH (Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  119 KLFPRAVDRSLK----ILGFCVD-----GDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            KLF +A+ + +K    +    +D     GD+  A   + +M+ +G  PNVV Y  LI   CQ+ R+ EA  +  ++   G  P   T+++++ G C+ GN+ +   L  EDM  I  G  P    Y  L+  L ++G    A    V+M+G+ I  + + +NSL+
Sbjct:  342 KLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALY-EDM--IKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLI 503          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 45/192 (23.44%), Postives = 90/192 (46.88%), Query Frame = 2
Query:   17 EGSKGRISPYDSVLYGLYREXXQDEALE--HLKQMEKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            +G K  I  ++ +L GL R   + +A++  H+ + +   P     ++ I  FC    +E A   FD M++ G  P+  +Y CLI  +  ++++    EL+KEM   G+ P   T+N ++  +  Q     A ++     + I     P    ++ ++K+      ++    +  +M+ KGI PD  ++  L+
Sbjct:  327 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYN---KMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLI 515          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP171_ARATH (Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 55/202 (27.23%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   32 RISPYDSVLYGLYREXXQDEALEHLKQMEKLFPRAVDRSL--KILG-FCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR-----------QGNVG---TALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            R S Y  + + L  E   ++A + LK+M   +     RS+  K++G FC   +V +A+  FD M+E G +P++  Y  +IH YC+   +++A  L ++M   G  P   T+  +L    +           QG VG    +  L E    GIG   +     Y+ LI   C+    + A+ L  +M+  G+ PD + + +L+
Sbjct:  555 RKSVYIKLFFSLCIEGYLEKAHDVLKKMSA-YRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVV----CYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLI 751          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP113_ARATH (Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 50/192 (26.04%), Postives = 86/192 (44.79%), Query Frame = 2
Query:   17 EGSKGRISPYDSVLYGLYREXXQDEALEHLKQM--EKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            EG +  +  Y+S+++ L +E   D   + L +M    + P     +  +  FC  G V++A   +    E G  P  + Y+ LIH  C  E V +A +++K     G+     TF+T+ + LC +G    A +LV   +    R  LP       +I ALC+ G  + A M+       G+   +  + SL+
Sbjct:  351 EGCELEVFRYNSMVFQLLKENNLDGVYDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELV---IAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLI 539          
The following BLAST results are available for this feature:
BLAST of CK938637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PPR81_ARATH5.965e-1129.28Pentatricopeptide repeat-containing protein At1g55... [more]
PP401_ARATH5.965e-1131.02Pentatricopeptide repeat-containing protein At5g28... [more]
PPR67_ARATH7.790e-1129.70Putative pentatricopeptide repeat-containing prote... [more]
PP293_ARATH7.790e-1123.44Pentatricopeptide repeat-containing protein At3g62... [more]
PP171_ARATH7.790e-1127.23Pentatricopeptide repeat-containing protein At2g26... [more]
PP113_ARATH7.790e-1126.04Pentatricopeptide repeat-containing protein At1g71... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_B07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938637 ID=CK938637; Name=CK938637; organism=Citrus sinensis; type=EST; length=928bp
GGGGGAGGGTAGTAAGGAGGGTTCCAAGGGCCGTATTAGTCCATATGATA
GCGTGTTATATGGTCTCTACAGAGAAANNNAACAGGATGAAGCACTTGAG
CATCTAAAGCAAATGGAGAAGTTGTTCCCCAGAGCTGTTGATAGGAGCTT
GAAGATATTAGGCTTTTGTGTGGATGGCGACGTGGAAGATGCAAAAAGGT
GCTTTGATCAAATGATTGAGGAAGGGGGGGTTCCAAATGTTGTTATTTAT
GACTGCCTAATCCATGCATATTGCCAAGAAGAGCGAGTGCGCGAAGCATC
TGAGCTAATGAAGGAGATGACCGGCCATGGTTATTTACCTATTGCATCAA
CATTCAATACTGTTTTAAGTGGGTTATGCAGGCAAGGCAATGTTGGGACT
GCTTTGAAGCTCGTTGAGGAGGATATGCGTGGGATTGGGAGGGGTTCTTT
ACCTGGTAGTGGACATTACAGCCCTTTAATCAAGGCTCTTTGTGAGAAGG
GTGGTTTTCAGAGTGCGTCAATGCTCCTTGTGCAAATGGTTGGCAAGGGC
ATCCTTCCTGATTATCTGACGTGGAATTCGTTGCTTATTTGTCTTAGTCA
ACAAACAACATGGTCAGTCAACATGTCCCATTTCCCTAAATAAATAATTG
CGATTGATTATAAAGACCTGAACCGTTGCTGCCGAAGGCTTCTCTTGCTC
TTGCTGAATGAGATGGTGGTTCACGAGCTGTCGGCAAAAGAGAAAAGATG
CAAATTGCGCATTTGGCCCACGGAGCTGGTTCGGTTTGGTTAGGTTTGCG
CATACACGATACGACACATACATTCATAATCCATCGACGTGTGGAAGTTG
GCCACGTCTTTTGCTCTTTCAGTTCACTAAAAGACGACGTTGACACTTGA
CGCACAACACGCTCATTATTCACGTGGT
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