CK938637

Overview
NameCK938637
Unique NameCK938637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 42/152 (27.63%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  146 SLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 601
            ++ I G C  G++E A +  D+  ++   PNV+ +  LI  +C + +  EA +L++ M      P   TFN ++SGL ++G V   + L+E   R   +G  P  G Y  ++  L +K     A  ++ QM+  G+ P +L++  +++ L +
Sbjct:  206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLE---RMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRPSFLSYKKMVLGLCE 354          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 54/203 (26.60%), Postives = 101/203 (49.75%), Query Frame = 2
Query:   14 KEGSKGRISPYDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL--ICLSQQTT 610
            KE +K  +  ++ ++ G  R    D AL+  ++M++    P  V  +  I GF   G +E+  +   +MIE G   +    + L+   C+E RV +A  L+ ++     LP    + +++  LC +     A++++EE  +   +G  P     + L++ L + G  + AS  + +M+  GILPD +T+N LL  +C S  +T
Sbjct:  221 KERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWK---KGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHST 420          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.854e-12
Identity = 47/197 (23.86%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   17 EGSKGRISPYDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 601
            +G    +  Y++V+  L +    + A   L +M+   + P  V  +  + G+ V GDV+      ++++  G  P+V+ +  +I+  C+ + +++A +  KEM   G  P   T+N ++   C  G+   ++KL  +       G  P    Y+  I++ C+    + A  LL  M+  G+ PD  T+++L+  LS+
Sbjct:  419 DGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKE---NGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSE 612          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 49/187 (26.20%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   17 EGSKGRISPYDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 571
            EG    I  Y++ +  L ++    EA E L +     L    V  ++ I   C   D+  A   F +M + G   ++ + + LI A+C++++++E+  L + +   G +P   T+ +++S  C++G++  ALK      R    G +P S  Y  LI  LC+K     A  L   M+ +G+ P  +T
Sbjct:  422 EGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKR---HGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVT 605          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP434_ARATH (Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.163e-12
Identity = 54/183 (29.51%), Postives = 91/183 (49.73%), Query Frame = 2
Query:   44 YDSVLYGLYREXXQDEALEHLKQM-EKLFPR-AVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            Y + ++G ++     +AL   ++M EK   R  V  S+ I G   +G+VE+A     +MI+EG  PN++ Y  +I   C+  ++ EA  L   +   G       + T++ G+CR+GN+  A  ++  DM    RG  P    Y+ +I  LC  G    A       V KG++ D +T+++LL
Sbjct:  245 YSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSML-GDME--QRGIQPSILTYNTVINGLCMAGRVSEA-----DEVSKGVVGDVITYSTLL 419          

HSP 2 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   44 YDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 541
            Y+S++ GL ++    EAL     +E   L P  V   + I   C +G   DA++  D M+ +G VPN++IY+ ++  YC+  +  +A  ++         P A T ++++ G C++G++  AL +  E           G   +  LIK  C KG  + A  LL +M+
Sbjct:  693 YNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFG---FLFLIKGFCTKGRMEEARGLLREML 857          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP365_ARATH (Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.163e-12
Identity = 53/193 (27.46%), Postives = 89/193 (46.11%), Query Frame = 2
Query:   14 KEGSKGRISPYDSVLYGLYREXXQDEALEHLKQMEKLFPRAVDRSLK--ILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            KEG K  +  Y++++         D A++ +K+M+KL  R   R+    I G+   GD+  +   FD M   G VP V  ++ LI+   ++ ++ +A E++ EMT  G      T+  ++ G    G+ G   K  E   R    G       Y  L+KA C+ G  QSA  +  +M  + I  +   +N L+
Sbjct:  547 KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTG---KAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILI 736          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP282_ARATH (Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 51/191 (26.70%), Postives = 92/191 (48.17%), Query Frame = 2
Query:   20 GSKGRISPYDSVLYGLYREXXQDEALEHLKQMEKLFPRAVDRSLKIL--GFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            G    +  Y S++ GL +    D+ALE   +M+    +    +   L  GFC   ++E A   F +++EEG  P+  IY+ LI  +     +  A +L K+M   G      T+ T++ GL + GN+  A +L  E M+ +  G +P    Y+ ++  L +KG F     +  +M    + P+ L +N+++
Sbjct:  614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTE-MQAV--GLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVI 801          

HSP 2 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 49/194 (25.26%), Postives = 90/194 (46.39%), Query Frame = 2
Query:   14 KEGSKGRISPYDSVLYGLYREXXQDEALEHLKQM--EKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            ++G K     Y  ++ G +R   +  ALE +  M    +    V     I G C  G    A+     MIEE  +  + + Y+ +I  + +E  +  A    +EM G+G  P   T+ ++++GLC+   +  AL++ +E      +  +P    Y  LI   C++   +SAS L  +++ +G+ P    +NSL+
Sbjct:  506 EKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPA---YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLI 696          

HSP 3 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 52/201 (25.87%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   47 DSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL----VEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL--ICLSQQTTWSVNM 625
            +++L  L ++   DEA E L +ME   + P  V  +  +LG C   +++ A+  F  ++E+G  PN   Y  LI    +    + A E++  MT          + T+++GLC+ G    A +L    +EE    +   S      Y+ +I    ++G   SA     +M G GI P+ +T+ SL+  +C + +   ++ M
Sbjct:  447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMS------YNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEM 641          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.046e-12
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   95 LEHLKQMEKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 550
            L H+K++  + P  +  +  I G    G++E  K   D+M++ G  P+VV Y  +I  Y     + +A E+ +EMT  G LP   T+N+++ GLC  G    A  L++E      RG  P    YS L+  L + G    A  ++ +MV KG
Sbjct:  312 LNHMKEVG-IDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEME---SRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP396_ARATH (Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 53/177 (29.94%), Postives = 83/177 (46.89%), Query Frame = 2
Query:   44 YDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYL 568
            Y  ++ GL      + A E L  M K  L P  +  ++ I G+   GD   A    + M+  G  PNV   + LIH Y +  R+ +A  +  EM      P  +T+N +L   C  G++  A +L +E +R   RG  P    Y+ L++ LC KG  + A  LL ++   GI  D++
Sbjct:  373 YKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLR---RGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGITIDHV 546          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 2
Query:   20 GSKGRISPYDSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 613
            G    I  Y+S++    R+   DEA+E   QM +    P     +  + GF   G VE A   F++M   G  PN+  ++  I  Y    +  E  ++  E+   G  P   T+NT+L+   + G       + +E  R    G +P    ++ LI A    G F+ A  +  +M+  G+ PD  T+N++L  L++   W
Sbjct:  344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540          
The following BLAST results are available for this feature:
BLAST of CK938637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PP230_ARATH1.087e-1227.63Pentatricopeptide repeat-containing protein At3g14... [more]
PP187_ARATH1.420e-1226.60Pentatricopeptide repeat-containing protein At2g36... [more]
PP239_ARATH1.854e-1223.86Putative pentatricopeptide repeat-containing prote... [more]
PP326_ARATH2.422e-1226.20Pentatricopeptide repeat-containing protein At4g19... [more]
PP434_ARATH3.163e-1229.51Pentatricopeptide repeat-containing protein At5g57... [more]
PP365_ARATH3.163e-1227.46Pentatricopeptide repeat-containing protein At5g04... [more]
PP282_ARATH5.395e-1226.70Pentatricopeptide repeat-containing protein At3g54... [more]
PP288_ARATH7.046e-1231.58Pentatricopeptide repeat-containing protein At3g60... [more]
PP396_ARATH9.202e-1229.94Pentatricopeptide repeat-containing protein At5g24... [more]
PP362_ARATH9.202e-1226.50Pentatricopeptide repeat-containing protein At5g02... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004440_B07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938637 ID=CK938637; Name=CK938637; organism=Citrus sinensis; type=EST; length=928bp
GGGGGAGGGTAGTAAGGAGGGTTCCAAGGGCCGTATTAGTCCATATGATA
GCGTGTTATATGGTCTCTACAGAGAAANNNAACAGGATGAAGCACTTGAG
CATCTAAAGCAAATGGAGAAGTTGTTCCCCAGAGCTGTTGATAGGAGCTT
GAAGATATTAGGCTTTTGTGTGGATGGCGACGTGGAAGATGCAAAAAGGT
GCTTTGATCAAATGATTGAGGAAGGGGGGGTTCCAAATGTTGTTATTTAT
GACTGCCTAATCCATGCATATTGCCAAGAAGAGCGAGTGCGCGAAGCATC
TGAGCTAATGAAGGAGATGACCGGCCATGGTTATTTACCTATTGCATCAA
CATTCAATACTGTTTTAAGTGGGTTATGCAGGCAAGGCAATGTTGGGACT
GCTTTGAAGCTCGTTGAGGAGGATATGCGTGGGATTGGGAGGGGTTCTTT
ACCTGGTAGTGGACATTACAGCCCTTTAATCAAGGCTCTTTGTGAGAAGG
GTGGTTTTCAGAGTGCGTCAATGCTCCTTGTGCAAATGGTTGGCAAGGGC
ATCCTTCCTGATTATCTGACGTGGAATTCGTTGCTTATTTGTCTTAGTCA
ACAAACAACATGGTCAGTCAACATGTCCCATTTCCCTAAATAAATAATTG
CGATTGATTATAAAGACCTGAACCGTTGCTGCCGAAGGCTTCTCTTGCTC
TTGCTGAATGAGATGGTGGTTCACGAGCTGTCGGCAAAAGAGAAAAGATG
CAAATTGCGCATTTGGCCCACGGAGCTGGTTCGGTTTGGTTAGGTTTGCG
CATACACGATACGACACATACATTCATAATCCATCGACGTGTGGAAGTTG
GCCACGTCTTTTGCTCTTTCAGTTCACTAAAAGACGACGTTGACACTTGA
CGCACAACACGCTCATTATTCACGTGGT
back to top