CK938637

Overview
NameCK938637
Unique NameCK938637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP133_ARATH (Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 48/180 (26.67%), Postives = 87/180 (48.33%), Query Frame = 2
Query:   62 GLYREXXQDEALEHLKQM--EKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICL 595
            GLY++    +A +    M    + P  V  ++ I G C  G  +DA++ F +M   G  P+ V ++ L+  +C+  R+ EA EL++     G++     +++++ GL R      A +L    ++   +   P    Y+ LI+ L + G  + A  LL  M  KGI PD   +N+++  L
Sbjct:  207 GLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLK---KNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKAL 383          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 49/183 (26.78%), Postives = 93/183 (50.82%), Query Frame = 2
Query:   44 YDSVLYGLYREXXQDEALEHLKQMEKLF-PRAVDRSLKILGFCVD-GDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            Y +++ G       D+A ++   + K   P ++  S  ++G C   G + DA+  F  M  EG   +VV Y+ L+H Y +  ++ +  EL+ EM   G  P  +T+N ++  +  +G +  A +++ E +R   RG +P +  ++ +I    ++G FQ A +L   M    + PD +T ++LL
Sbjct:  411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIR---RGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALL 590          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 51/189 (26.98%), Postives = 87/189 (46.03%), Query Frame = 2
Query:    8 GSKEGSKGRISPY--DSVLYGLYREXXQDEALEHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD 562
            G    S   ++PY  + ++ G  ++   D+A     +M    ++P     ++ I   C  G ++DA+     M      P+VV Y+ L+H Y +  +  EAS L  ++      P   T+NT++ GLC  GN+  A +L EE    +     P    Y+ L+K   + G    A+ +  +M+ KGI PD
Sbjct:  297 GDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL---IFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPD 478          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  140 DRSLKILGFCVD-----GDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL--ICLSQQ 604
            D S+KI    +D       ++     +  M  +G  PNV  Y+ L+ A C+  +V  A +L+ EM+  G  P A ++ TV+S +C  G V    +L E           P    Y+ LI  LC++  ++ A  L+ +MV KGI P+ +++++L+  +C S Q
Sbjct:  143 DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAER--------FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQ 296          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 2
Query:   59 YGLYREXX--QDEALEHLKQM-EKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEE-DMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            Y +YRE     D +++  K+M  K+ P A   +  ++ F  +G+ E  +R + +M EE G  PNV  Y+ L+ AYC    + EA ++ +EM   G +     +NT++ GLC    V  A +L  +  ++GI    L     Y  L+   C+ G   S  ++  +M  KG   D LT  +L+
Sbjct:  217 YKMYREVFGLDDVSVDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLT----YEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALV 393          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP299_ARATH (Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 43/153 (28.10%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  155 ILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 613
            I G C    ++DA R + +M   G VP+ ++Y+CL+    +  +V EA +L ++M   G      T+N ++ GL R G       L  +  +   +G    +  +S +   LC +G  + A  L+ +M  +G   D +T +SLLI   +Q  W
Sbjct:  331 IQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKK---KGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRW 480          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 49/191 (25.65%), Postives = 98/191 (51.31%), Query Frame = 2
Query:   20 GSKGRISPYDSVLYGLYREXXQDEALEHLKQME--KLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 586
            G++  +  Y+ ++  + +E   + A    ++M+   L P  V  +  I GF   G ++D    F++M +    P+V+ Y+ LI+ +C+  ++    E  +EM G+G  P   +++T++   C++G +  A+K    DMR +  G +P    Y+ LI A C+ G    A  L  +M+  G+  + +T+ +L+
Sbjct:  257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY-VDMRRV--GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALI 444          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 2
Query:   50 SVLYGLYREXXQDEALEHLKQMEKL-FPRAVDRSLKILG-FCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 559
            S++ GL  E   ++ALE  ++ +   FP        ++G +C    +EDA +  D+M  +G  PN   YD ++H   + +R +EA E+ + M+     P  ST+  ++   C +  +  A+K+ +E     G+G LPG   +S LI ALC +     A     +M+  GI P
Sbjct:  307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PTVSTYEIMVRMFCNKERLDMAIKIWDEMK---GKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 42/155 (27.10%), Postives = 75/155 (48.39%), Query Frame = 2
Query:   86 DEALEHLKQMEKLFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 550
            DE  + +K+   L P AV     + G C DG V++A + F  M ++G +P VVIY  ++ A+C+  ++ +A  + ++M  +G  P A ++  ++ GL     +  A+    E +     G  P    +  L+ ALC   G + A   +  +  KG
Sbjct:  119 DEIFKKMKE-GGLIPNAV---AMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLES---GHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKG 266          
BLAST of CK938637 vs. ExPASy Swiss-Prot
Match: PP292_ARATH (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   50 SVLYGLYREXXQDEAL-EHLKQMEK--LFPRAVDRSLKILGFCVDGDVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL-PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 598
            ++L GL+ +    E + E L  MEK    P ++  +  I  F    D E  +R  +QM E+G  P V  Y  +I AYC    + EA +L K+M  H  + P    +N +++   + GN G AL L EE    + R   P    Y+ L K L EK   ++   L+ +MV +   P+ +T   L+  LS
Sbjct:  550 NMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR---PNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLS 733          
The following BLAST results are available for this feature:
BLAST of CK938637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PP133_ARATH9.202e-1226.67Pentatricopeptide repeat-containing protein At1g79... [more]
PP164_ARATH1.202e-1126.78Pentatricopeptide repeat-containing protein At2g19... [more]
PPR56_ARATH1.570e-1126.98Pentatricopeptide repeat-containing protein At1g22... [more]
PP270_ARATH2.050e-1129.63Pentatricopeptide repeat-containing protein At3g48... [more]
PP155_ARATH2.050e-1129.83Pentatricopeptide repeat-containing protein At2g15... [more]
PP299_ARATH2.677e-1128.10Pentatricopeptide repeat-containing protein At4g01... [more]
PP143_ARATH3.497e-1125.65Putative pentatricopeptide repeat-containing prote... [more]
PP112_ARATH3.497e-1129.07Pentatricopeptide repeat-containing protein At1g71... [more]
PP356_ARATH4.567e-1127.10Pentatricopeptide repeat-containing protein At4g38... [more]
PP292_ARATH4.567e-1131.02Pentatricopeptide repeat-containing protein At3g61... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_B07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938637 ID=CK938637; Name=CK938637; organism=Citrus sinensis; type=EST; length=928bp
GGGGGAGGGTAGTAAGGAGGGTTCCAAGGGCCGTATTAGTCCATATGATA
GCGTGTTATATGGTCTCTACAGAGAAANNNAACAGGATGAAGCACTTGAG
CATCTAAAGCAAATGGAGAAGTTGTTCCCCAGAGCTGTTGATAGGAGCTT
GAAGATATTAGGCTTTTGTGTGGATGGCGACGTGGAAGATGCAAAAAGGT
GCTTTGATCAAATGATTGAGGAAGGGGGGGTTCCAAATGTTGTTATTTAT
GACTGCCTAATCCATGCATATTGCCAAGAAGAGCGAGTGCGCGAAGCATC
TGAGCTAATGAAGGAGATGACCGGCCATGGTTATTTACCTATTGCATCAA
CATTCAATACTGTTTTAAGTGGGTTATGCAGGCAAGGCAATGTTGGGACT
GCTTTGAAGCTCGTTGAGGAGGATATGCGTGGGATTGGGAGGGGTTCTTT
ACCTGGTAGTGGACATTACAGCCCTTTAATCAAGGCTCTTTGTGAGAAGG
GTGGTTTTCAGAGTGCGTCAATGCTCCTTGTGCAAATGGTTGGCAAGGGC
ATCCTTCCTGATTATCTGACGTGGAATTCGTTGCTTATTTGTCTTAGTCA
ACAAACAACATGGTCAGTCAACATGTCCCATTTCCCTAAATAAATAATTG
CGATTGATTATAAAGACCTGAACCGTTGCTGCCGAAGGCTTCTCTTGCTC
TTGCTGAATGAGATGGTGGTTCACGAGCTGTCGGCAAAAGAGAAAAGATG
CAAATTGCGCATTTGGCCCACGGAGCTGGTTCGGTTTGGTTAGGTTTGCG
CATACACGATACGACACATACATTCATAATCCATCGACGTGTGGAAGTTG
GCCACGTCTTTTGCTCTTTCAGTTCACTAAAAGACGACGTTGACACTTGA
CGCACAACACGCTCATTATTCACGTGGT
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