CK938635

Overview
NameCK938635
Unique NameCK938635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938635_ssr785 microsatellite CK938635_ssr785:785..799. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938635_ssr118 microsatellite CK938635_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7248 contig Csv1_Contig7248:436..1316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938635 vs. ExPASy Swiss-Prot
Match: IKBL2_HUMAN (NF-kappa-B inhibitor-like protein 2 OS=Homo sapiens GN=NFKBIL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 2 
Query:  158 MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK-------------ERKKEAVRFLIENGAFLPDDINDSRF------------NPPLHYCP 607
            M E+++H       L+R     R    +   D  GWTPLH     G +++V+ LLD G  V+    G   +G+TPLH A   GH EV ++LLERGA +  RT+   G +PL T  +              +K  A+  L++  A   D  +   F            +PPL  CP
Sbjct:  528 MGETLLHRACIEGQLRRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAVDDPG-GQGCEGITPLHDALNCGHFEVAELLLERGASVTLRTRK--GLSPLETLQQWVKLYRRDLDLETRQKARAMEMLLQAAASGQDPHSSQAFHTPSSLLFDPETSPPLSPCP 699
[Close]
BLAST of CK938635 vs. ExPASy Swiss-Prot
Match: LITD_LATTR (Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:  254 DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 550
            D   T LH+    G I ++K+LL  G ++         +G T LH+AA     E+  VL+E GADI+AR+  A   TPLH+AAK  +K  V +L+E GA
Sbjct:  739 DGNLTVLHLAVSTGQINIIKELLKRGSNIEEKT----GEGYTSLHIAAMRKEPEIAVVLIENGADIEARS--ADNLTPLHSAAKIGRKSTVLYLLEKGA 831
The following BLAST results are available for this feature:
BLAST of CK938635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IKBL2_HUMAN4.228e-1130.86NF-kappa-B inhibitor-like protein 2 OS=Homo sapien... [more]
LITD_LATTR7.212e-1140.40Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredec... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_B05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938635 ID=CK938635; Name=CK938635; organism=Citrus sinensis; type=EST; length=881bp
GGGAAGCCAATCTCACGGTGTCGTTTCGCGTTTTCTTTTTTCTCGTTTTG
CTTCTAAATCGTAAGCAAAAATTAATCAATCAAAACTTTCTTTGTTTGCT
TAAATTTGATATATAAGTAATTAATTAATTAACTAAGAGAAAAAGAAAGA
AGGAAGGATGATAGAAAGCATGGTGCATGAGCAACTGGGTCCGTTTACGC
TGCAGCGTAAGGCTTCTAGGAAGCGGTTCTTTAGGTCAGTGATCGATACT
GACGATAGGGGCTGGACTCCTCTTCATATCGGTGCCCGTAAAGGTGATAT
CAAACTGGTAAAGCAACTTCTTGATGAAGGAATGGATGTGAATGTGGCAG
CATGGGGCCCCAAATCAAAAGGGGTGACTCCACTCCACCTTGCTGCTCAG
GGTGGGCACCTTGAAGTCATGGATGTTTTGCTTGAGCGAGGCGCTGACAT
TGATGCTAGAACCAAGGGTGCTTGCGGCTGGACCCCGCTTCACACTGCAG
CCAAGGAAAGAAAGAAGGAAGCTGTTAGATTCCTGATTGAGAATGGAGCT
TTTCTGCCAGATGACATCAACGATAGCAGGTTCAATCCGCCACTTCATTA
TTGCCCTAGTCTTGAATGGGCCTATGAGGAGATGATGCGGTTTCAAAGAG
AGAGCTTTTCAGCAGGCGAGACCTCTTACAGCTCTGAGAGTTAAATGCTC
TCTCCCGCCTGCTGGTTCACATGATGCCACTGCTTTGGTTGGATTTGGCA
TCTGATGCTGTTTTATCAGTTGCCCACCACTATAAATAATAATAATAATA
AACCAGGCTGGTCCTGTATCCAAAGTGTCTGTTGTATTGTTTGTCACTTG
GCTTCGCATCTGTTGACATATATACAATGTG
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