CK938632

Overview
NameCK938632
Unique NameCK938632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.822e-40
Identity = 82/168 (48.81%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   90 SMLHLFLVLGSLMAASAGN------FYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFKN 575
            +++ LFL+  S + A          F +++  TW     K LN G  L L L K +G+GFQSK  YL+G   M +KL  G++AG VTA+YL S  +  DEIDFEFLGN +G P  L TNVFT GKG+REQ+ + WFDP+  +HTYS+LWN  +I+F VD  PIR FKN
Sbjct:    9 ALVALFLMASSTVMAIPPRKAIDVPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKN 176          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 82/170 (48.24%), Postives = 111/170 (65.29%), Query Frame = 3
Query:   93 MLHLFLVLGSLMAASA------GNFYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFKN 575
            M  LFL + +LMA+S+       +F  +F+I W +      ++G++  LSL   +G GFQ+K+ Y +G   M+LKLV G+SAG VTAYY+ S    G   DEIDFEFLGN +G PY + TNV+ NG G+RE +   WFDPT D+HTYSILWN  +++F VD  PIR +KN
Sbjct:    1 MTALFLFMTALMASSSIAATPTQSFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKN 170          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 77/182 (42.31%), Postives = 116/182 (63.74%), Query Frame = 3
Query:   30 FSLFIQTLLVPRLLKHMSMASMLHLFLVLGSLMAASAGNFYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFKN 575
            FS+F+ TL + R+   +     +  F+  G           +++ +TWG      L++G+ + L + ++SG GF+SK+ Y  G  +M++K+  GN+ G VTA+YL S G   DEIDFEFLGN++G P TL TN+F NG+G+RE++F  WF+PT  +HTY +LWNP +I+F VD  PIR +KN
Sbjct:    7 FSVFVVTLWIIRVDARVFGGRGIEKFVTFG-----------QNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN 177          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 3
Query:  147 FYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFKN 575
            F  ++ +TWG      LN G  + LSL  +SGSGF+SKN Y  G   +++K+ P +++G VTA+YL S G+T DE+DFEFLGN  G    + TNVFTNGKG+REQ+   WFDP+ DFHTY+ILWNP +I+  VD  P+R FKN
Sbjct:   39 FDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEG-KLAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKN 180          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 81/187 (43.32%), Postives = 105/187 (56.15%), Query Frame = 3
Query:   78 MSMASMLHLFLVLGSLMAA----SAG----------NFYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGD-----REQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREF 569
            +S+ S+ HL ++ GS + A    S G          NFYK F   WG    +M  N   LT+ L + SGSGF+S   +  G     +KL PG +AG +T+ YL +    PG   DE+D EFLG + G PYTL TNV+  G GD     RE +F  WFDPT DFH Y+ILW+P+ IIF VD  PIR +
Sbjct:    6 ISLLSIFHLLVLWGSSVNAYWPPSPGYWPSSKVGSLNFYKGFRNLWGPQHQRMDQNA--LTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFH-DEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRY 189          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.217e-29
Identity = 69/150 (46.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  147 FYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDR-----EQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREF 569
            F ++F   WG    +     D++TL L K++GSGF+S   Y  G     +KL PG +AG  T+ YL +    PG   DE+D EFLG + G PY+L TNVF  G GDR     E +F  WFDPT DFH Y+ILWNP +I+F VD  PIR +
Sbjct:   39 FDREFRTLWGSQHQR--REQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDH-DEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY 185          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.038e-29
Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  102 LFLVLGSLMAASAGNFYKDFDITWGDG-------RAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNSSGDPYTLHTNVFTNGKGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREF 569
            + +V+ +++AA+ G       +TWG+        +A ++N    L L+L K SGSGF+S+  Y  G  ++++K     S G +T++YL S  S  DE+ F+ LG + G PY L+TN++  G+G ++Q+F  WFDPT D+H+YS LWNP +++F VD TPIR +
Sbjct:    1 MVMVVVAVVAAAQGQEETTGFVTWGNNYYQTWGHQALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKN-GPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY 162          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.313e-27
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  201 NGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS---TWDEIDFEFLGNSSGDPYTLHTNVFTNG--KGDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFKN 575
            NG L  L+L K+SG+G  SKN+Y YG    +LKL  G ++G V A+YL +  +   + DEID E LG S  D +T+ TNV+ NG  +  RE++F+ WFDPT  FH Y+++WN    +F VD  P+R+F N
Sbjct:   59 NGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPN 188          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.805e-26
Identity = 70/175 (40.00%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   63 RLLKHMSMASMLHLFLVLGSLMAASAGNFYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEIDFEFLGNSSGDPYTLHTNVFTNGK--GDREQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFK 572
            RLL  MS+ S L     L +L   S   F + +   +GD    +  +G  + L+L + +GSGF S + YL+G     +KL    +AG V A+Y+ +        DEIDFEFLGN     + + TN++ NG     RE++++ WFDPT DFH YSILW+   IIF VD  PIRE K
Sbjct:    6 RLLVFMSLFSGLVSGFALQNLPITS---FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVK 177          
BLAST of CK938632 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 70/177 (39.55%), Postives = 96/177 (54.24%), Query Frame = 3
Query:   57 VPRLLKHMSMASMLHLFLVLGSLMAASAGNFYKDFDITWGDGRAKMLNNGDLLTLSLHKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEIDFEFLGNSSGDPYTLHTNVFTNGKGD--REQQFHXWFDPTADFHTYSILWNPQRIIFSVDGTPIREFK 572
            + R L  MS+ + L     L  L       F + +   +GD    +  +G  + L+L + +GSGF S + YL+G     +KL    SAG V A+YL +        DEIDFEFLGN  G  + + TN++ NG     RE++++ WFDPT DFH YSILW+   IIF VD  PIRE K
Sbjct:    4 ITRFLVFMSLFTSLVSGFALQKLPLIQ---FDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVK 177          
The following BLAST results are available for this feature:
BLAST of CK938632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
XTH_BRAOB5.822e-4048.81Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH8_ARATH2.212e-3948.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH2.212e-3942.31Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH4.928e-3952.45Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH5.835e-3243.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.217e-2946.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH6.038e-2939.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH3.313e-2745.38Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH2.805e-2640.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH8.161e-2639.55Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_C11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938632 ID=CK938632; Name=CK938632; organism=Citrus sinensis; type=EST; length=576bp
GGGGATCGCTCCAGTTTCGAATTATCAACTTCTCTCTGTTCATTCAAACA
CTACTTGTACCTCGTTTGCTCAAGCATATGTCTATGGCTTCAATGTTGCA
TTTGTTTCTTGTGCTTGGCTCTTTGATGGCTGCCTCTGCTGGTAACTTCT
ACAAAGATTTTGACATCACCTGGGGAGATGGCCGTGCCAAGATGCTCAAC
AATGGCGACCTTCTTACTCTTTCCCTCCATAAAGCTTCTGGCTCAGGATT
CCAGTCCAAGAATGAGTATCTATATGGCAAGATTGACATGCAGCTCAAGC
TTGTCCCTGGCAACTCTGCTGGCACAGTCACTGCTTATTACCTAAAATCA
CCGGGATCAACATGGGATGAGATAGACTTTGAATTCCTGGGAAATTCAAG
TGGTGACCCTTACACTCTTCATACCAATGTATTTACAAATGGCAAAGGTG
ACAGAGAGCAACAATTTCACNNNTGGTTTGACCCCACTGCTGACTTTCAC
ACCTATTCTATCCTCTGGAATCCTCAGCGCATTATCTTCTCTGTTGATGG
CACCCCAATAAGAGAATTTAAGAACT
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