CK938628

Overview
NameCK938628
Unique NameCK938628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938628 vs. ExPASy Swiss-Prot
Match: BLH8_ARATH (BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana GN=BLH8 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.492e-14
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = -1
Query:  178 LKTISKQFRCLKDAVTGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLCQQRALQQLG------MIQHNAWRPQRGLPERSVSVLRAWLFEHFLHP 447
            LK  S+ F+ L+ A+   +K              +I        +++  Q+R    +G        Q + WRPQRGLPER+V+VLRAWLF+HFLHP
Sbjct:  369 LKRTSRSFKALRTAIAEHVK--------------QISSHSSNGNNNNRFQKRQRSLIGNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHP 450          

HSP 2 Score: 35.8094 bits (81), Expect = 6.492e-14
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = -3
Query:   26 YPKDSDKPMLAKQTGLTRSQV 88
            YP DSDK MLA QTGL+R+QV
Sbjct:  451 YPTDSDKQMLATQTGLSRNQV 471          
BLAST of CK938628 vs. ExPASy Swiss-Prot
Match: BLH11_ARATH (BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.444e-13
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = -1
Query:  178 LKTISKQFRCLKDAVTGQIKAANK--MLGEEDCVGSKIEG-SRLKFVDHHLCQQRALQQLGMIQ---HNAWRPQRGLPERSVSVLRAWLFEHFLHP 447
            L+ +++ F  L++A+  Q+ +  +  ++  +D       G S+L   D +     +LQ+LG++Q    +AW+P RGLPE SV++LRAWLF+HFLHP
Sbjct:  134 LQAMTRHFGSLEEAIISQLNSVRRRFIISHQDVPKIISSGLSQLSLFDGNTTSS-SLQRLGLVQGPQRHAWKPIRGLPETSVAILRAWLFQHFLHP 228          

HSP 2 Score: 28.8758 bits (63), Expect = 1.444e-13
Identity = 11/21 (52.38%), Postives = 18/21 (85.71%), Query Frame = -3
Query:   26 YPKDSDKPMLAKQTGLTRSQV 88
            YP +++K +LA QTGL+++QV
Sbjct:  229 YPNEAEKLVLASQTGLSKNQV 249          
The following BLAST results are available for this feature:
BLAST of CK938628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BLH8_ARATH6.492e-1436.46BEL1-like homeodomain protein 8 OS=Arabidopsis tha... [more]
BLH11_ARATH1.444e-1337.50BEL1-like homeodomain protein 11 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004440_C07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938628 ID=CK938628; Name=CK938628; organism=Citrus sinensis; type=EST; length=483bp
TTTTTTTTTTTTTTTTTTTCAATTTTACCTGGCTCCTGGTAAGCCCTGTT
TGTTTTGCCAGCATCGGCTTGTCCGAATCTTTCGGATACCTGAATCAAAG
ATTCTTACATTAATATCTATACAAAATTTGCAAATGGGTTGTGAGAATTG
TGAATTGTGGATTTTGATTTTTGCTTACGGGTGAAGGAAGTGTTCGAAAA
GCCAAGCGCGAAGAACTGAAACAGATCTTTCAGGCAATCCTCTTTGGGGT
CTCCAAGCATTGTGCTGGATCATTCCCAATTGTTGAAGAGCCCTTTGTTG
ACAAAGATGGTGGTCGACAAATTTGAGCCTGGAGCCTTCAATCTTGCTCC
CGACGCAATCCTCCTCACCCAGCATCTTATTTGCCGCTTTAATTTGCCCT
GTAACTGCATCTTTCAAGCACCGGAATTGCTTTGAAATTGTCTTGAGAGA
AAAAAAAAAAAAAGAAAAAAAAAAAAAAACTTG
back to top