CK938604

Overview
NameCK938604
Unique NameCK938604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938604 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.994e-52
Identity = 111/239 (46.44%), Postives = 146/239 (61.09%), Query Frame = 2
Query:   83 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 799
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234          
BLAST of CK938604 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.569e-48
Identity = 111/235 (47.23%), Postives = 136/235 (57.87%), Query Frame = 2
Query:   83 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKK 787
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+                      EY KL+A R + + +R  +  +KK
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKK 232          
BLAST of CK938604 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.613e-39
Identity = 96/229 (41.92%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   83 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 763
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of CK938604 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.287e-38
Identity = 95/229 (41.48%), Postives = 122/229 (53.28%), Query Frame = 2
Query:   83 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 763
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of CK938604 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.115e-17
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  131 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQ 625
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI+
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIR 161          
The following BLAST results are available for this feature:
BLAST of CK938604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO3.994e-5246.4440S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI4.569e-4847.2340S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA6.613e-3941.9240S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN4.287e-3841.4840S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU7.115e-1735.1540S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938604 ID=CK938604; Name=CK938604; organism=Citrus sinensis; type=EST; length=911bp
GGGGATAATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACT
CCACTGGGTTAGTCTGATAGCCGCAGAACAAAATGAAGTTCAATATTGCA
AATCCCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAA
ACTCCGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATG
CTCTTGGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGT
GACAAGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGT
TCGTCTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGA
GAGATGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCA
GATCTCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCT
TCCTGGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAG
CCTCAAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGG
AAGTATGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAA
GGTTAGCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGC
AGAGGAAGCGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAAGGCC
AAAGCAGAGGCTGCTGAATACCAGAAGCTCCTTGCTACCCGGTTGAAGGA
ACAGCGTGAACGTCGCAGTGAGAGTTTGGCAAAGAAGAGATCCAGGCTCT
CTGCTGCTTCTAAGCCATCTACTGCTGCGGCTTAGATATGAAACAGGGGT
GGCTTTTTGGTCACAACTAAGTATAGTCAGGGCTGAATACTTCTAGTAGG
TGGAGGTAATT
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