CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS ++ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METBU (Nucleoside diphosphate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E TY+MVKPDGVQR LVG+++SR E               +  ++EHYK+ + +PFF  L+ ++TSGP V M  EG   +   R + G+T+P+ A PGTIRGDLAV  GRNVVH SD+PE+ +REIGL F+E E+  +  A  +WL E
Sbjct:    1 MERTYVMVKPDGVQRCLVGEIVSRIEKKGLKIAALRMNVMTEAAAKEHYKEHSERPFFGSLVSFVTSGPSVSMVIEGNNAIKIMRAINGATNPVDALPGTIRGDLAVDMGRNVVHASDAPESAEREIGLHFEESEISGYPRADDEWLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METB6 (Nucleoside diphosphate kinase OS=Methanoregula boonei (strain 6A8) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            ++ T++M+KPDGVQRG VG ++SRFE              P+    E Y++  SKPFFP L  YI  GP   M WEG  VVA  RK+IG+T+P +A PGTIRGD  +  GRNV+H SDSPE+  REIG+ FK  EL  +T
Sbjct:    1 MDRTFVMIKPDGVQRGQVGGIVSRFEAKGLKLVAARFEVLPESRVIEQYQEHLSKPFFPSLKSYIRGGPCFLMVWEGRNVVAIVRKMIGATNPQEAAPGTIRGDFGIDIGRNVIHASDSPESAAREIGIHFKPAELFAYT 140          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E+T++MVKPDGV+RGL+G++ISRFE                +++E HY +   KPFF +L+E++TSGPVV M WEG  +VA +R +IG T P+ A+PGTIRGD A    +NV+HGSDS ++ +RE+ LWF E
Sbjct:    1 MEKTFLMVKPDGVKRGLIGEIISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELVEFLTSGPVVAMEWEGEDIVAVSRLMIGKTKPVDAQPGTIRGDFASTMSQNVIHGSDSVDSAERELSLWFAE 133          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_THERP (Nucleoside diphosphate kinase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 71/147 (48.30%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E T I+VKPD VQRGLVG+V+ R E            +  ++++E HY +   KPF+  L+ +ITSGPVV    EG   +   RK +G TDP QAEPGTIRGDLA+  G+NV+HGSDSPE    EIGL+F+E EL  +  A  +W+
Sbjct:    1 MERTLIIVKPDAVQRGLVGEVLRRLEQRGLRFVGLKLMKVDREVAERHYAEHRGKPFYEDLLAFITSGPVVVGVVEGPRAIEITRKTMGKTDPAQAEPGTIRGDLALTIGQNVIHGSDSPEKASYEIGLFFREDELVSYERAIDRWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HALLT (Nucleoside diphosphate kinase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENG--KREIGLWFKEGELCQWTPAQAQWLRE 721
            E T++MVKPDGVQRGL+G+++SRFE            Q  +DL+ +HY +   KPFF  L+++ITS PV  M WEGA      R ++G TDP ++ PGTIRGD  +  G+NV+H SD  + G  +REI L+F E EL  +    A W+ E
Sbjct:    6 ERTFVMVKPDGVQRGLIGEIVSRFEERGLKLVGGKFMQIDEDLAHQHYGEHEGKPFFDGLVDFITSAPVFAMVWEGADATRQVRSMVGETDPAESAPGTIRGDFGLDLGQNVIHASDHEDEGANEREIDLFFDEEELVDYGLDTAAWVYE 155          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METS3 (Nucleoside diphosphate kinase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 65/139 (46.76%), Postives = 97/139 (69.78%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 691
            ++++++M+KPD VQR L+G ++SRFE            Q  +DL++ HY +   KPFF  LIEYITS P + M  EG   +++ RKL+G+T+PL+A+ GTIRGD A+ TGRN++H SDSP++ +REI L+F E E+C +
Sbjct:    2 IQKSFVMMKPDAVQRRLMGKILSRFEEKGLQIVAVKLMQIDEDLAKTHYGEHADKPFFGSLIEYITSSPSLAMVIEGEEAISTIRKLVGATNPLEADLGTIRGDFAMDTGRNIIHASDSPDSAEREINLFFNEDEICDY 140          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.290e-33
Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T++M+KPDGV+RGLVG++++RFE            Q  ++L+E HY +   KPFFP L+ +ITSGPVV M  EG GVVA  RK++G+T P  A PGTIRGD A     NV+HGS + E+ +REI L+F+  EL
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.752e-33
Identity = 67/136 (49.26%), Postives = 92/136 (67.65%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T++M+KPDGV+RGLVG++++RFE            +  ++L+E HY +   KPFFP L+ +ITSGPVV M  EG GVVA  RK++G+T P  A PGTIRGD A     NV+HGS + E+ +REI L+F+  EL
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.752e-33
Identity = 63/147 (42.86%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T++M+KPDGV RGL+G+++ R E               +DL++ HY + + KPFF +L+E+ITSGPV  M  EG  VV   R L+G T+P ++ PGTIRGD  +  G+N++HGSDS  +  +EI LWFKE E+  +    + W+
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESAPGTIRGDFGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWV 147          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAAS1.990e-3446.31Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_METBU2.599e-3447.65Nucleoside diphosphate kinase OS=Methanococcoides ... [more]
NDK_METB62.599e-3450.00Nucleoside diphosphate kinase OS=Methanoregula boo... [more]
NDK_EXISA2.599e-3449.62Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_THERP5.789e-3448.30Nucleoside diphosphate kinase OS=Thermomicrobium r... [more]
NDK_HALLT5.789e-3445.33Nucleoside diphosphate kinase OS=Halorubrum lacusp... [more]
NDK_METS37.561e-3446.76Nucleoside diphosphate kinase OS=Methanobrevibacte... [more]
NDK_THET81.290e-3350.00Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET23.752e-3349.26Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_MACCJ3.752e-3342.86Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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