CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HAES1 (Nucleoside diphosphate kinase OS=Haemophilus somnus (strain 129Pt) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 51/136 (37.50%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E+T  ++KPD V+R L+G++ISR E               ++ +E  Y + + K FF +LI Y+TS P+V +  +    V   R  +G+T+P  AE GT+R + A+   +N VHGSDS EN +REI  +F E E+
Sbjct:    3 LEQTLAIIKPDAVERNLIGNIISRLEDKGFQIIAMKMLHLNQEQAEGFYTEHSDKAFFAELIRYMTSAPIVVLVLQKENAVKDYRTFMGTTNPEIAENGTLRYEFAINQTQNSVHGSDSLENAQREIAYFFAEAEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_FRAP2 (Nucleoside diphosphate kinase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            + T  ++KPD V++ ++G++  RFE               K  +E  Y     +PFF  L+E++ SGPV+    EG   +A  RKL+G+T+P +AE GTIR D A     N VHGSD+PE   +EI  +F + E+
Sbjct:    4 QRTLSIIKPDAVEKNIIGEIYRRFEKSGLKVVAAKMKHLSKAEAEGFYAVHKDRPFFSALVEFMISGPVMIQVLEGDNAIAKNRKLMGATNPKEAEAGTIRADFADSIDANAVHGSDAPETAAQEIKYFFSDIEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_CHRVO (Nucleoside diphosphate kinase OS=Chromobacterium violaceum GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T  +VKPD V + ++G +  RFE            Q  +  +E  Y     +PFF  L++++ SGPV+  A EG   V   R+L+G+TDP +AE GTIR D A     N VHGSDS EN   E+  +F   E+
Sbjct:    3 IERTLSIVKPDAVAKNVIGKIYDRFESAGLKIVAAKMKQLSRAEAEGFYAVHKERPFFKDLVDFMVSGPVMIQALEGENAVLKNRELMGATDPKKAEAGTIRADFAESIDANAVHGSDSVENAAIEVAYFFAASEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_CELJU (Nucleoside diphosphate kinase OS=Cellvibrio japonicus (strain Ueda107) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            VE+T+ ++KPD V+   +G +++RFE            Q     +E  Y +   + F+ +L+ ++TSGPVV     G   +A  R+L+G+TDP +A PGTIR D ++    N VHGSDSP +  REI  +F   E+
Sbjct:    3 VEQTFSIIKPDAVKNNHIGAIVARFEKAGLKVIAQRMLQLTPAQAEGFYAEHKGRSFYDELVAFMTSGPVVVQVLYGENAIALNRELMGATDPTKAAPGTIRADFSMSMPANAVHGSDSPISAAREIAYFFPTHEV 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E T  ++KPD V + +VG +++RFE            Q  +  +E  Y     +PFF  L++++ SGPV     EG   +   R L+G+TDP +A PGTIR D A     N VHGSD+PE    E+  +F E
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E T  ++KPD V + +VG +++RFE            Q  +  +E  Y     +PFF  L++++ SGPV     EG   +   R L+G+TDP +A PGTIR D A     N VHGSD+PE    E+  +F E
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E T  ++KPD V + +VG +++RFE            Q  +  +E  Y     +PFF  L++++ SGPV     EG   +   R L+G+TDP +A PGTIR D A     N VHGSD+PE    E+  +F E
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_THICR (Nucleoside diphosphate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T+ ++KPD V+R L+G ++S+ E                  ++  Y + + KPFF  LI+ +T+GP+V    EG   +A  R+++G TDP  A  G+IR + A+   +N VHGSDSPE+ +REI  +F E E+
Sbjct:    2 LERTFSIIKPDAVKRNLIGQIVSKLEQNGLKVIASKMVFLTVQEAKGFYAEHDGKPFFDTLIKNMTAGPIVVQVLEGDDAIAKNREIMGPTDPENAPAGSIRKEYAISMQQNSVHGSDSPESAQREISYFFSEIEV 137          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SHEHH (Nucleoside diphosphate kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KPD V +  +G + +RFE               ++ +E  Y + + +PFF  L+ ++TSGP++    EG   V + R+++G+T+P +A  GTIR D A     N  HGSDS  + +REI  +F   ELC  T
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREIAYFFSTEELCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SALTY (Nucleoside diphosphate kinase OS=Salmonella typhimurium GN=ndk PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y + + KPFF  L+E++TSGP+V    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+ +REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRT 142          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HAES15.620e-2137.50Nucleoside diphosphate kinase OS=Haemophilus somnu... [more]
NDK_FRAP25.620e-2137.04Nucleoside diphosphate kinase OS=Francisella philo... [more]
NDK_CHRVO5.620e-2138.24Nucleoside diphosphate kinase OS=Chromobacterium v... [more]
NDK_CELJU5.620e-2136.76Nucleoside diphosphate kinase OS=Cellvibrio japoni... [more]
NDK_BORPE5.620e-2136.84Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA5.620e-2136.84Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR5.620e-2136.84Nucleoside diphosphate kinase OS=Bordetella bronch... [more]
NDK_THICR7.340e-2136.76Nucleoside diphosphate kinase OS=Thiomicrospira cr... [more]
NDK_SHEHH7.340e-2134.29Nucleoside diphosphate kinase OS=Shewanella halifa... [more]
NDK_SALTY7.340e-2135.71Nucleoside diphosphate kinase OS=Salmonella typhim... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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