CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_RALME (Nucleoside diphosphate kinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 667
            +E T  ++KPD V + ++G + +RFE               +  +E+ Y    ++PFF  L++++ SGPV+  A EG   +A  R L+G+TDP +AE GTIR D A     N VHGSD+PE    E+  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKVVAAKMVHLSRGEAEQFYAVHKARPFFKDLVDFMVSGPVMIQALEGESAIAKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETAAVEVAFFF 133          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PSYIN (Nucleoside diphosphate kinase OS=Psychromonas ingrahamii (strain 37) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 685
            +E T  ++KPD V + L G +++RFE            +   + +E  Y +   + F+  LI+++TSGP+V    +    +   R++IG TDP QA  GTIR D A  T  N VHGSDSP +  +EI  +F + E+C
Sbjct:    3 LERTLSIIKPDAVGKHLTGRILARFERAGLQPVAIKMVRLTSEQAEAFYAEHKGREFYQPLIDFMTSGPMVVQVLQAENAINLYREMIGKTDPTQAAAGTIRADFAESTRCNAVHGSDSPASAAKEIAFFFSDDEIC 139          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PSEPF (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            V+ T+ ++KPD V + ++G + +RFE            Q  K  +E  Y + +++ FF +L+ ++TSGPVV    EG   +A  R+L+G+T+P +A PGTIR D A     N VHGSDS     REI  +F   E+
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEDAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGELVAFMTSGPVVVQVLEGENAIARNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFFAATEV 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METEP (Nucleoside diphosphate kinase OS=Methylobacterium extorquens (strain PA1) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 50/135 (37.04%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            E T+ ++KPD  +R + G V +  E            +  ++ +E+ Y+    +PFF +L+E++TSGPVV    EG   VA  R+++G+T+P QA  GTIR   A   G N VHGSDS +N + EI  +F E ++
Sbjct:    4 ERTFSILKPDATRRNITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNEADI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ERWCT (Nucleoside diphosphate kinase OS=Erwinia carotovora subsp. atroseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 685
            +E T+ +VKP+ V +  +G + +RFE            +  ++ +E  Y +   KPFF  L+E++ SGP++  A EG   V   R ++G+T+P  A  GT+R D A     N VHGSDS E+ +REI  +F + E+C
Sbjct:    3 IERTFSIVKPNAVAKNAIGAIYARFESAGFTIVASKMLRLSREQAEGFYAEHKGKPFFDGLVEFMMSGPIMVQALEGENAVQRNRDIMGATNPANALAGTLRADYADSFTANAVHGSDSIESAQREIAYFFSDDEIC 139          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BART1 (Nucleoside diphosphate kinase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T+ M+KPD  +R L G +    E               K  +E+ Y     +PFF +L+E+++SGP V    EG   +A  R+++G+T+P  AE GTIR   A+  G N VHGSDS E  K EI  WF E E+
Sbjct:    3 LERTFSMIKPDATRRNLTGAITKMLEDAGLRVIASKRVWMSKREAEKFYAVHKERPFFSELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPSDAEEGTIRKVHALSIGENSVHGSDSAETAKTEITFWFSEIEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SHEPW (Nucleoside diphosphate kinase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KPD V +  +G + +RFE               ++ +E  Y + + +PFF  L+ ++TSGP++    EG   V + R+++G+T+P +A  GTIR D A     N  HGSDS  + +RE+  +F   ELC  T
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREVAYFFSTEELCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y + + KPFF  L+E++TSGP+V    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+ +REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAFFFGEGEVCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_CITK8 (Nucleoside diphosphate kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G++ +RFE                + +   Y + + KPFF  L+E++TSGP+V    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+ +REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAYFFGEGEVCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BURM1 (Nucleoside diphosphate kinase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E T  ++KPD V + ++G + SRFE               +  +E+ Y    ++PFF  L++++ SGPV+    EG G +   R L+G+TDP +AE GTIR D A     N VHGSD+PE    EI  +F E
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVAARMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETAAVEIAFFFPE 135          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RALME7.340e-2136.64Nucleoside diphosphate kinase OS=Ralstonia metalli... [more]
NDK_PSYIN7.340e-2135.77Nucleoside diphosphate kinase OS=Psychromonas ingr... [more]
NDK_PSEPF7.340e-2137.50Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_METEP7.340e-2137.04Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_ERWCT7.340e-2135.77Nucleoside diphosphate kinase OS=Erwinia carotovor... [more]
NDK_BART17.340e-2138.24Nucleoside diphosphate kinase OS=Bartonella triboc... [more]
NDK_SHEPW9.587e-2133.57Nucleoside diphosphate kinase OS=Shewanella piezot... [more]
NDK_SALAR9.587e-2135.71Nucleoside diphosphate kinase OS=Salmonella arizon... [more]
NDK_CITK89.587e-2135.71Nucleoside diphosphate kinase OS=Citrobacter koser... [more]
NDK_BURM19.587e-2137.59Nucleoside diphosphate kinase OS=Burkholderia mult... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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