CX675522

Overview
NameCX675522
Unique NameCX675522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVCB (Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 75/254 (29.53%), Postives = 110/254 (43.31%), Query Frame = 1
Query:   34 IDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            IDF    P  +G  Y+LV VD  S W+EA       AK +   L + IF RFG P+V+ +D G  F +K+        G+  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG    L           +   + DM        LQ   L  L L  +E  +      +   D+ +    +  G  V +  H T+       L+ RW  P+ +L + P
Sbjct:    1 IDFTEVKPRLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-----------VNFPDPDMTRVTNSPSLQ-AHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVRRHQTK------NLEPRWKGPYTVLLTTP 235          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_FENV1 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W IDF    P + G  Y+LV VD  S WVEA       A  +   + + IF RFG P+VI SD G  F +++        G+  K+   Y   S+GQ +  NR IK+ L K+   T  +DW   L  +L   R       G++PY I+YG
Sbjct:  765 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNT-PNRFGLTPYEILYG 913          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_KORV (Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTP--LGMSPYRIVYG 474
            W +DF    P  +GN Y+LV +D  S WVEA    T  A T+   + + I  RFG P+V+ SD G  F  ++      + G+  K+   Y   S+GQ +  NR IK+ L K+   T  +DW   L  +L   R    TP   G++PY I++G
Sbjct:  842 WEVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRAR---NTPGQFGLTPYEILHG 990          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 53/152 (34.87%), Postives = 76/152 (50.00%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTP--LGMSPYRIVYG 474
            W +DF    P  +GN Y+LV +D  S WVEA    T  A  +   + + I  RFG P+V+ SD G  F  ++      + G+  K+   Y   S+GQ +  NR IK+ L K+   T  +DW   L  +L   R    TP   G++PY I+YG
Sbjct:  880 WEVDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRAR---NTPGRFGLTPYEILYG 1028          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W IDF    P + G  Y+LV VD  S WVEA       A  +   + + IF RFG P+VI SD G  F +++        G+  K+   Y   S+GQ +  NR IK+ L K+   T  +DW   L  +L   R       G++PY I+YG
Sbjct:  908 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNT-PNRFGLTPYEILYG 1056          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 67/253 (26.48%), Postives = 105/253 (41.50%), Query Frame = 1
Query:   34 IDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERT-----KHWHDKHIQHKKFIPGQLVLLHNTRLRLFLGKLKSRWSSPFKLLK 777
            ID++GP PP  G LY+LV VD ++ +      PT    T  T    N+ +    P+VI SD+GA F +  FA    + G+  + +T YH  S+G+ +  N +IK++L K++      W   L     A    Y   L  +P+++++G   + P                     A Q  L L   +EL L       +Y+  T     + W          + GQLV     R       L+ RW  P  +L+
Sbjct:  878 IDYIGPLPPSQGYLYVLVIVDGMTGFT--WLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPF--------------------ANQDTLDLTREEELSLLQEIRASLYQPSTPPASSRSWSP--------VVGQLVQERVAR----PASLRPRWHKPSTVLE 1096          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 67/253 (26.48%), Postives = 102/253 (40.32%), Query Frame = 1
Query:   34 IDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERT-----KHWHDKHIQHKKFIPGQLVLLHNTRLRLFLGKLKSRWSSPFKLLK 777
            ID++GP PP  G LY+LV VD ++ +      PT    T  T    N+ +    P+VI SD+GA F +  FA    + G+  + +T YH  S  + +  N +IK++L K++      W   L     A    Y   L  +P+++++G   + P                     A Q  L L   +EL L       +Y   T     + W          + GQLV     R       L+ RW  P  +LK
Sbjct:  878 IDYIGPLPPSQGYLYVLVVVDGMTGFT--WLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPF--------------------ANQDTLDLTREEELSLLQEIRTSLYHPSTPPASSRSWSP--------VVGQLVQERVAR----PASLRPRWHKPSTVLK 1096          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 1
Query:   10 VEVFYVWGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLP 492
            V+ F  + ID++GP PP  G L++LV VD ++ +V     PT    T  T    N+ +    P+VI SD+GA F +  FA      G++ + +T YH  S+G+ +  N +IK++L K++      W   L     A   +Y      +P+++++G   + P
Sbjct:  869 VKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFV--WLYPTKAPSTSATVKALNMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1027          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.434e-13
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   34 IDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLP 492
            ID++GP PP  G L++LV VD ++ +V     PT    T  T    N+ +    P+V+ SD+GA F +  FA    + G++ + +T YH  S+G+ +  N +IK++L K++      W   L     A   +Y      +P+++++G   + P
Sbjct:  877 IDYIGPLPPSNGYLHVLVVVDSMTGFV--WLYPTKAPSTSATVKALNMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1027          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 54/248 (21.77%), Postives = 114/248 (45.97%), Query Frame = 1
Query:   34 IDFMGPFPPFF-GNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLLHNTRLRLFLG-KLKSRWSSPFKL 771
            +D +GP P    GN Y +  +  ++K++ A  +    AKT+   + ++   ++G  +  I+D G  + N I         +++  +T +H  + G  + S+R + + +   ++  + DW + L   ++ + T         PY +V+G+  +LP    +K H      N D +A   + +L++      +L      + +KE+ K  +D  ++  +   G  VLL N      +G KL  +++ P+K+
Sbjct:  970 VDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF-NKLHSIEPIYNIDDYAKESKYRLEVAYARARKLL-----EAHKEKNKENYDLKVKDIELEVGDKVLLRNE-----VGHKLDFKYTGPYKI 1206          
The following BLAST results are available for this feature:
BLAST of CX675522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
POL_MLVCB1.801e-1629.53Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine ... [more]
POL_FENV15.794e-1535.33Pol polyprotein (Fragment) OS=Feline endogenous vi... [more]
POL_KORV7.567e-1534.87Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol... [more]
POL_GALV7.567e-1534.87Pol polyprotein OS=Gibbon ape leukemia virus GN=po... [more]
POL_BAEVM9.883e-1535.33Pol polyprotein OS=Baboon endogenous virus (strain... [more]
POL_SFVCP1.686e-1426.48Pro-Pol polyprotein OS=Simian foamy virus (isolate... [more]
POL_FOAMV4.905e-1426.48Pro-Pol polyprotein OS=Human spumaretrovirus GN=po... [more]
POL_SFV3L1.427e-1329.81Pro-Pol polyprotein OS=Simian foamy virus type 3 (... [more]
POL_SFV12.434e-1329.41Pro-Pol polyprotein OS=Simian foamy virus type 1 G... [more]
POL4_DROME5.423e-1321.77Retrovirus-related Pol polyprotein from transposon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G09-N18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675522 ID=CX675522; Name=CX675522; organism=Citrus sinensis; type=EST; length=831bp
ATACTGGAAGTAGAAGTTTTTTATGTTTGGGGAATAGATTTCATGGGACC
TTTTCCCCCATTCTTTGGAAACTTATATATCCTTGTTGCTGTAGACTATG
TCTCCAAGTGGGTGGAAGCTACAGCATTACCTACCAATGATGCTAAAACC
ATGGTGACTTTTCTTCAAAAAAATATTTTCTCTAGGTTTGGTACTCCTAG
AGTAATTATTAGTGATGAAGGCGCATATTTTTGCAACAAAATCTTTGCTG
CAACAATGATGAAATATGGAGTCAGACACAAAATAGCAACAACATATCAC
CTATAATCCAATGGTCAGGCTAAAGTGTCCAATAGAGAGATTAAAAAGAT
CTTAGAAAAAGTGGTGAACCCAACAAGGAGGGACTGGTCTTTACATTTGC
ATGACTCTTTATGGGCCTACAGAACAGCATACAAAACCCCACTCGGCATG
TCTCCTTACCGAATTGTTTATGGCAAGGCTTGTCATTTGCCCCTAGAGCT
AGAGCATAAAGCACACTGGGCACTGAAGAAACTAAATTGGGACATGCATG
CTGCAGCAGAACAAAGGAAGCTTCAACTTTGTGAGCTTGATGAATTAAGG
CTGTTTTCATATGAAAGTGAAAAAATTTATAAAGAGAGGACAAAACATTG
GCATGACAAGCATATTCAACACAAGAAGTTCATCCCTGGTCAATTAGTGT
TGCTTCACAATACAAGACTAAGGTTGTTTCTGGGAAAGCTCAAATCACGA
TGGTCTAGCCCATTTAAGCTATTGAAATCTTACCCTCATGGAGCTGTTGA
TCTTTCAGATGAACAAACGGGTCACGAATTC
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