CX675522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12 Identity = 44/164 (26.83%), Postives = 81/164 (49.39%), Query Frame = 1 Query: 34 IDFMGPFPPFFGNLYILVAVDYVS--KWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHW 519 +D++GP PP G +++LV VD + W+ T T+ A V N + P+V+ SD+G+ F ++ FA + ++ + +T YH S+G+ + N EIKK+L K++ W + A + +P+++++G C+LP + W Sbjct: 879 MDYIGPLPPSEGYVHVLVVVDAATGFTWLYPTKAQTSKATIKVL----NHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLPFANKDTLDW 1038
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_AVIRE (Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12 Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 1 Query: 28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474 W +DF G Y+LV VD S WVEA ++ ++ L +I RFG P I SD G F K+ V K+ Y S+GQ + NR +KK + K+ + RR L S +A T Y G+SP+ I+YG Sbjct: 192 WEVDFTEMITAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAKLEDRDRRGLGLP-PPSGFAPGTVYPGREGLSPFEILYG 339
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_WMSV (Pol polyprotein (Fragment) OS=Woolly monkey sarcoma virus GN=pol PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11 Identity = 51/152 (33.55%), Postives = 72/152 (47.37%), Query Frame = 1 Query: 28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTP--LGMSPYRIVYG 474 W +DF P +GN Y+LV +D S WVEA T A T+ K + P+V+ SD G F ++ + G+ K+ Y S+GQ + NR IK+ L K+ T +DW L A A TP G++PY I+YG Sbjct: 13 WEVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVC----KRNSTPLRIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVALLP---LALLRAKNTPSRFGLTPYEILYG 157 The following BLAST results are available for this feature:
BLAST of CX675522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675522 ID=CX675522; Name=CX675522; organism=Citrus sinensis; type=EST; length=831bpback to top |