CX675522

Overview
NameCX675522
Unique NameCX675522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 44/164 (26.83%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   34 IDFMGPFPPFFGNLYILVAVDYVS--KWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHW 519
            +D++GP PP  G +++LV VD  +   W+  T   T+ A   V     N  +    P+V+ SD+G+ F ++ FA    +  ++ + +T YH  S+G+ +  N EIKK+L K++      W   +     A    +      +P+++++G  C+LP   +    W
Sbjct:  879 MDYIGPLPPSEGYVHVLVVVDAATGFTWLYPTKAQTSKATIKVL----NHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLPFANKDTLDW 1038          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_AVIRE (Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W +DF        G  Y+LV VD  S WVEA       ++ ++  L  +I  RFG P  I SD G  F  K+         V  K+   Y   S+GQ +  NR +KK + K+ +  RR   L    S +A  T Y    G+SP+ I+YG
Sbjct:  192 WEVDFTEMITAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAKLEDRDRRGLGLP-PPSGFAPGTVYPGREGLSPFEILYG 339          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_WMSV (Pol polyprotein (Fragment) OS=Woolly monkey sarcoma virus GN=pol PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 51/152 (33.55%), Postives = 72/152 (47.37%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTP--LGMSPYRIVYG 474
            W +DF    P  +GN Y+LV +D  S WVEA    T  A T+     K   +    P+V+ SD G  F  ++      + G+  K+   Y   S+GQ +  NR IK+ L K+   T  +DW   L     A   A  TP   G++PY I+YG
Sbjct:   13 WEVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVC----KRNSTPLRIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVALLP---LALLRAKNTPSRFGLTPYEILYG 157          
The following BLAST results are available for this feature:
BLAST of CX675522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
POL_FFV2.061e-1226.83Pro-Pol polyprotein OS=Feline foamy virus GN=pol P... [more]
POL_AVIRE5.996e-1233.56Pol polyprotein (Fragment) OS=Avian reticuloendoth... [more]
POL_WMSV1.744e-1133.55Pol polyprotein (Fragment) OS=Woolly monkey sarcom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G09-N18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675522 ID=CX675522; Name=CX675522; organism=Citrus sinensis; type=EST; length=831bp
ATACTGGAAGTAGAAGTTTTTTATGTTTGGGGAATAGATTTCATGGGACC
TTTTCCCCCATTCTTTGGAAACTTATATATCCTTGTTGCTGTAGACTATG
TCTCCAAGTGGGTGGAAGCTACAGCATTACCTACCAATGATGCTAAAACC
ATGGTGACTTTTCTTCAAAAAAATATTTTCTCTAGGTTTGGTACTCCTAG
AGTAATTATTAGTGATGAAGGCGCATATTTTTGCAACAAAATCTTTGCTG
CAACAATGATGAAATATGGAGTCAGACACAAAATAGCAACAACATATCAC
CTATAATCCAATGGTCAGGCTAAAGTGTCCAATAGAGAGATTAAAAAGAT
CTTAGAAAAAGTGGTGAACCCAACAAGGAGGGACTGGTCTTTACATTTGC
ATGACTCTTTATGGGCCTACAGAACAGCATACAAAACCCCACTCGGCATG
TCTCCTTACCGAATTGTTTATGGCAAGGCTTGTCATTTGCCCCTAGAGCT
AGAGCATAAAGCACACTGGGCACTGAAGAAACTAAATTGGGACATGCATG
CTGCAGCAGAACAAAGGAAGCTTCAACTTTGTGAGCTTGATGAATTAAGG
CTGTTTTCATATGAAAGTGAAAAAATTTATAAAGAGAGGACAAAACATTG
GCATGACAAGCATATTCAACACAAGAAGTTCATCCCTGGTCAATTAGTGT
TGCTTCACAATACAAGACTAAGGTTGTTTCTGGGAAAGCTCAAATCACGA
TGGTCTAGCCCATTTAAGCTATTGAAATCTTACCCTCATGGAGCTGTTGA
TCTTTCAGATGAACAAACGGGTCACGAATTC
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