CX675520

Overview
NameCX675520
Unique NameCX675520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGRI RY+KK   ++ RVG  A                  AGNAARD K  RI PRH+ LA+R DEEL  L+   TIA+GGV+P+IN  LL K
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLIQ-ATIAYGGVMPHINKALLLK 133          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGRI RYLK+   ++ RVG+ +                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAYGGVLPHINKALLLK 125          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 53/104 (50.96%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGRI RYLKK    + RVG+ A                  AGNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYS--QRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK GR S   RVG  A                  AGNA++D K  RI PRH+LLA+R DEEL  +L   TIA GGV+P+I+  LL K S
Sbjct:   29 SRSYKAGLQFPVGRIHRFLK-GRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEEL-DILIKATIAGGGVIPHIHKALLGKHS 133          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 52/104 (50.00%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGRI RYLK+   ++ RVG+ +                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP+IN  LL K
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAFGGVLPHINKALLLK 125          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGR+ RYLK+    + RVG+ A                  AGNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFPVGRI RYLK+    + RVG+ A                  AGNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKG-RYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S +AGLQFP GR+ R+LK+  +   RVG  A                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAYGGVLPHINRALLLK 132          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 52/104 (50.00%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S KAGLQFP GRI R+LK    ++ RVG  A                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPRINRALLLK 127          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 51/104 (49.04%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S KAGLQFP GR+ R+LK    ++ RVG  A                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPRINRALLLK 127          
The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AZ_YARLI3.208e-1650.96Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_PICST4.190e-1650.00Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_ASHGO4.190e-1650.96Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AV_TETTH4.190e-1652.34Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_DEBHA9.335e-1650.00Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_KLULA1.219e-1549.04Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]
H2AZ_YEAST2.080e-1550.00Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_GIBZE4.633e-1548.08Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_COCIM6.051e-1550.00Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3... [more]
H2AZ_NEOFI7.903e-1549.04Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G07-N14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTACAGTCC
AAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTAGAATGG
TCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATACATCAAA
GAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAAGCCTTC
TTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGTTGCTGC
CTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCAAGACTC
CACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCCTCATCG
TTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTTCTTGTT
GTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGAGGTACT
CAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGCTGAGAG
TAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAACTGCAG
ACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCACCCCCTT
TCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATCACACCA
GCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAACAAAAT
TTTCTCGAGAAACAAACGGAAACTAAAAGA
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