CX675520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14 Identity = 51/106 (48.11%), Postives = 63/106 (59.43%), Query Frame = -1 Query: 257 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571 SRS +AGLQFPVGRI R LK+ + RVG A AGNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K S Sbjct: 31 SRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 135
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/104 (49.04%), Postives = 59/104 (56.73%), Query Frame = -1 Query: 263 SRSVKAGLQFPVGRIGRYLKK-GRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571 S S KAGLQFP GRI R+L+ R R+G A AGNAA+D K RI PRH+ LA+R DEEL L+ TIA GGVLP+IN LL K Sbjct: 25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPHINRALLLK 127
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1 Query: 260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571 SRS +AGLQFPVGRI R+LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122 The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bpback to top |