CX675520

Overview
NameCX675520
Unique NameCX675520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 51/106 (48.11%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R LK+   +  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K S
Sbjct:   31 SRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 135          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/104 (49.04%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  263 SRSVKAGLQFPVGRIGRYLKK-GRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 571
            S S KAGLQFP GRI R+L+   R   R+G  A                  AGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP+IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPHINRALLLK 127          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGRI R+LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122          
The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AZ_BOVIN1.348e-1448.57Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2[more]
H2AV3_ORYSJ1.348e-1448.11Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AZ_PHANO1.761e-1449.04Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AV_XENTR1.761e-1448.57Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ... [more]
H2AV_XENLA1.761e-1448.57Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3[more]
H2AV_PAGMA1.761e-1448.57Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3[more]
H2AV_MOUSE1.761e-1448.57Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN1.761e-1448.57Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE1.761e-1448.57Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK1.761e-1448.57Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G07-N14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTACAGTCC
AAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTAGAATGG
TCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATACATCAAA
GAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAAGCCTTC
TTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGTTGCTGC
CTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCAAGACTC
CACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCCTCATCG
TTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTTCTTGTT
GTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGAGGTACT
CAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGCTGAGAG
TAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAACTGCAG
ACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCACCCCCTT
TCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATCACACCA
GCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAACAAAAT
TTTCTCGAGAAACAAACGGAAACTAAAAGA
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