CX675520

Overview
NameCX675520
Unique NameCX675520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGRI R L+KG Y+QRVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R+L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 68/104 (65.38%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   21 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/104 (66.35%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  260 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 571
            SRS +AGLQFPVGR+ R+L+KG Y+ RVG GAP                 AGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = -1
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGR+ R+LKKG Y  RVG GAP                 AGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_SEPOF2.289e-3065.71Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A_PARLI2.289e-3065.71Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_MYTGA2.289e-3065.71Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED2.289e-3065.71Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH2.289e-3065.71Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA2.289e-3065.71Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_MOUSE2.289e-3065.71Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AX_CICAR2.289e-3065.38Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2A4_PSAMI2.289e-3066.35Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A1_PSAMI2.289e-3065.71Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G07-N14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTACAGTCC
AAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTAGAATGG
TCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATACATCAAA
GAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAAGCCTTC
TTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGTTGCTGC
CTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCAAGACTC
CACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCCTCATCG
TTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTTCTTGTT
GTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGAGGTACT
CAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGCTGAGAG
TAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAACTGCAG
ACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCACCCCCTT
TCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATCACACCA
GCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAACAAAAT
TTTCTCGAGAAACAAACGGAAACTAAAAGA
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