CX675520

Overview
NameCX675520
Unique NameCX675520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGR+ R+L+KG Y++RVG GAP                 AGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R+L+KG Y+QRVG GAP                 AGNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGRI R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGRI R L+KG Y+ RVG GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y+ RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R+L+KG Y++RVG GAP                 AGNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            +RS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AE_PSAMI5.099e-3064.76Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A6_ARATH5.099e-3063.81Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_LYTPI5.099e-3064.76Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A3_ARATH5.099e-3063.81Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A_PLADU6.659e-3064.76Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_MYTTR6.659e-3065.71Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A2_ARATH6.659e-3063.81Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A_ONCMY8.697e-3064.76Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_ASTRU8.697e-3063.81Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AX_DANRE8.697e-3064.76Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G07-N14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTACAGTCC
AAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTAGAATGG
TCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATACATCAAA
GAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAAGCCTTC
TTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGTTGCTGC
CTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCAAGACTC
CACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCCTCATCG
TTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTTCTTGTT
GTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGAGGTACT
CAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGCTGAGAG
TAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAACTGCAG
ACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCACCCCCTT
TCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATCACACCA
GCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAACAAAAT
TTTCTCGAGAAACAAACGGAAACTAAAAGA
back to top