CX675520

Overview
NameCX675520
Unique NameCX675520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGL FPVGRI R L+KG Y+QRVG+GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   16 SRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 120
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGL FPVGR+ R L+KG Y+QRVG+GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
[Close]
BLAST of CX675520 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -1 
Query:  257 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 571
            SRS KAGL FPVGR+ R L+KG Y+QRVG+GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
The following BLAST results are available for this feature:
BLAST of CX675520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A1_ORYSI1.483e-2963.81Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A3_RAT1.937e-2964.76Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE1.937e-2964.76Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN1.937e-2964.76Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A2_PICGU1.937e-2965.71Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A2_ORYSJ2.530e-2962.86Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI2.530e-2962.86Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT3.305e-2962.86Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A1_PICST3.305e-2964.76Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1_DEBHA3.305e-2964.76Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G07-N14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675520 ID=CX675520; Name=CX675520; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTACAGTCC
AAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTAGAATGG
TCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATACATCAAA
GAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAAGCCTTC
TTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGTTGCTGC
CTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCAAGACTC
CACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCCTCATCG
TTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTTCTTGTT
GTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGAGGTACT
CAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGCTGAGAG
TAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAACTGCAG
ACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCACCCCCTT
TCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATCACACCA
GCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAACAAAAT
TTTCTCGAGAAACAAACGGAAACTAAAAGA
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