CK938573

Overview
NameCK938573
Unique NameCK938573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.730e-39
Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.140e-38
Identity = 86/198 (43.43%), Postives = 118/198 (59.60%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLP LPY Y ALEP I  + M++HH KHHQ YV   N A          VE+L  A+ ++  S    L+GA+  +GGGH NHS+FW  ++P  +GGGE PH  L  AI +  G  +A  +  +       GSGW WL + T  K LVVE++ NQD  +    T  P+ G+DVWEHAYYL+Y+N +P+Y+   +NV++W
Sbjct:    4 TLPALPYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWPVEKLVGAVKQLPES----LRGAVTNHGGGHANHSLFWTVMSP--QGGGE-PHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGNT--PIFGLDVWEHAYYLKYQNRRPEYIGAFYNVIDW 191          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.140e-38
Identity = 93/210 (44.29%), Postives = 124/210 (59.05%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 747
            TLP+L Y Y ALEP      M++HH KHHQAYV N N A+E L         Q L K+      +L  AI+ N GGH+NHS+FWK+L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ KA       PLLG+DVWEHAYYL+++N +PDY+K  W+V+NW + ++ ++K+
Sbjct:    4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLT-AIRNNVGGHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQ-ENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFWHVVNWDFVAERFEKK 206          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.489e-38
Identity = 84/204 (41.18%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  151 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANANAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEKQD----ITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_BRAFL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.489e-38
Identity = 85/147 (57.82%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  199 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 639
            IS EIMQ+HHQKHH  YV N N A EQL +A++K D + ++ LQ AIKFNGGGH+NHSIFW NL P   GGGEP    L  AI   FGS EA  +KM+A   A+QGSGW WLGLD   K+L +    NQDPL      L PLLGIDV
Sbjct:    2 ISAEIMQVHHQKHHATYVNNLNAAEEQLAEAIHKQDVTKMIALQSAIKFNGGGHINHSIFWNNLCP--SGGGEPT-GPLAEAITRDFGSFEAFKEKMTAATVAVQGSGWGWLGLDPTSKKLRIVACPNQDPL-EGTTGLKPLLGIDV 144          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.945e-38
Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP+LPY   ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G          I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:    5 LPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.317e-38
Identity = 83/204 (40.69%), Postives = 121/204 (59.31%), Query Frame = 1
Query:  151 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++  +  NGGGH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQTLINNGGGHLNHALFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQ 198          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.658e-38
Identity = 86/203 (42.36%), Postives = 117/203 (57.64%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.658e-38
Identity = 86/203 (42.36%), Postives = 117/203 (57.64%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.390e-38
Identity = 88/209 (42.11%), Postives = 120/209 (57.42%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 747
            TLP+L Y Y ALEP    + M++HH KHHQAY+ N N A+E   + L K   + +  L         A++ N GGHVNH++FWK L       G     +L  AI+  FGS+EA   +         GSGW WL L  E  +L V +TANQD PL+ K    V   P+L +DVWEHAYYL Y+N +PD++K  WNV+NW  A+  ++++
Sbjct:    4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEK 205          
The following BLAST results are available for this feature:
BLAST of CK938573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM1_STAA38.730e-3941.50Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM_PSEPU1.140e-3843.43Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_PASMU1.140e-3844.29Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_STRP61.489e-3841.18Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_BRAFL1.489e-3857.82Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_STAHJ1.945e-3841.50Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM_STRP13.317e-3840.69Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_SHIFL5.658e-3842.36Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_ECO575.658e-3842.36Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_PASHA7.390e-3842.11Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938573 ID=CK938573; Name=CK938573; organism=Citrus sinensis; type=EST; length=915bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTTGCCATCAGAAAAG
CTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCGCTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGG
GTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGCAGCTTTTCACGCTGA
AGTGACAATAAAACGATATTTTGCAGATGATGACAGACACCCTTTCTTTT
GCAGTGAGTGTTACT
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