CN187772

Overview
NameCN187772
Unique NameCN187772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 6.052e-50
Identity = 89/133 (66.92%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV++KD++RG V  +SK+DP  EAA+F +QVI++NHPGQIG GY PVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  311 KNVSIKDIRRGNVCGDSKNDPPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 7.904e-50
Identity = 91/133 (68.42%), Postives = 116/133 (87.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV+VKD+KRG VAS+SK+DPA+ AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+
Sbjct:  198 KNVSVKDVKRGHVASDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKE 330          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.348e-49
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            K V+VKD++RG VAS++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  302 KGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.761e-49
Identity = 92/131 (70.23%), Postives = 114/131 (87.02%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 397
            KNV++KD++RG VAS+SK+DPA EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  315 KNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 5.123e-49
Identity = 88/133 (66.17%), Postives = 113/133 (84.96%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV+VK+L+RG+VA +SK +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK V  KD
Sbjct:  313 KNVSVKELRRGYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKD 445          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.141e-48
Identity = 86/133 (64.66%), Postives = 114/133 (85.71%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV++KD+KRGFVAS++K+DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIK+V KK+
Sbjct:  297 KNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.491e-48
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV+VK+++RG V  +SK+DP + A +F + VI++NHPGQI  GY+PVLDCHT+HIA KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  311 KNVSVKEIRRGNVCGDSKNDPPKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSD 443          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.542e-48
Identity = 87/133 (65.41%), Postives = 114/133 (85.71%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV+VK+L+RG+VA +SK++P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+
Sbjct:  313 KNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.664e-48
Identity = 87/133 (65.41%), Postives = 112/133 (84.21%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KNV+VK+++RG V  ++K+DP +  A+F + VI++NHPGQI  GY+PVLDCHT+HIA +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  311 KNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.664e-48
Identity = 88/133 (66.17%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 403
            KN++VK+L+RG+VA +SK+ P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD
Sbjct:  313 KNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKD 445          
The following BLAST results are available for this feature:
BLAST of CN187772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_CRYNE6.052e-5066.92Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_EIMBO7.904e-5068.42Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_TETPY1.348e-4969.92Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_HYDAT1.761e-4970.23Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A1_DROME5.123e-4966.17Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_CRYPV1.141e-4864.66Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_ASHGO1.491e-4867.67Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A2_DROME2.542e-4865.41Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_YEAST5.664e-4865.41Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_APIME5.664e-4866.17Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004P18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187772 ID=CN187772; Name=CN187772; organism=Citrus sinensis; type=EST; length=503bp
AGGGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCA
ACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACTTCACCTCACAGGTC
ATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCT
TGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGA
AGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTG
AAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGT
TGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGG
ACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAAAAGAAG
GATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAGTGAGG
AGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTATTTTCTCTGTTTAT
GCT
back to top