CN187772

Overview
NameCN187772
Unique NameCN187772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 71/115 (61.74%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 349
            KNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  299 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.940e-38
Identity = 72/127 (56.69%), Postives = 101/127 (79.53%), Query Frame = 2
Query:    8 NVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKN 388
            NV+V+D+ RG V  ++K+DP  +  +  +QVI+MNHP  I  GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IK+
Sbjct:  304 NVSVEDIHRGNVCGDAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.637e-37
Identity = 70/127 (55.12%), Postives = 98/127 (77.17%), Query Frame = 2
Query:   20 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 400
            K++K G V  ++K+DP + A +F +QVI+MNHPG I  GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K
Sbjct:  303 KEIKAGHVCGDAKNDPPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 62/130 (47.69%), Postives = 92/130 (70.77%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 394
            + V  KD+KRG V  +  + P   A  FT+++I++ HP  + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I +V+
Sbjct:  300 RGVEKKDIKRGDVVGHPNNPPT-VADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CN187772 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 65/132 (49.24%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    5 KNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 400
            + V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+ +V+ K
Sbjct:  300 RGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
The following BLAST results are available for this feature:
BLAST of CN187772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_HELGL2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE2.548e-4061.74Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_BLAHO6.940e-3856.69Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A2_EUPCR2.637e-3755.12Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SULSO1.402e-3047.69Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_SULTO4.078e-3049.24Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187772 ID=CN187772; Name=CN187772; organism=Citrus sinensis; type=EST; length=503bp
AGGGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCA
ACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACTTCACCTCACAGGTC
ATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCT
TGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGA
AGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTG
AAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGT
TGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGG
ACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAAAAGAAG
GATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAGTGAGG
AGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTATTTTCTCTGTTTAT
GCT
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