CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.757e-44
Identity = 110/248 (44.35%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                ++ L K +   G H+   AQN  +   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAA-GSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.757e-44
Identity = 110/248 (44.35%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                ++ L K +   G H+   AQN  +   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAA-GSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.757e-44
Identity = 110/248 (44.35%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                ++ L K +   G H+   AQN  +   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAA-GSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.757e-44
Identity = 110/248 (44.35%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                ++ L K +   G H+   AQN  +   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAA-GSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.519e-44
Identity = 107/240 (44.58%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            M RK    GNWK N T +E  + V  L +G+                  G+V+++      VAAQN   ++ GAFTGE+S  ML  L + +VI+GHSERR    E +E V  KV  A   GLK I CVGE+L QRE G T E+V  Q K     +S+      V+AYEP+WAIGTGK AT  QA+EV   +R+ +      ++A A RI YGGSVN AN  EL   P++DG LVGGASLK
Sbjct:    1 MSRKVIAAGNWKMNKTPKEAVEFVQAL-KGRVADADTEVVVGVPFVCLPGVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKVHAAFKYGLKPIICVGESLTQREQGVTAELVRYQVKIALLGLSAEQVKEAVIAYEPIWAIGTGKTATNEQAEEVCGIIRECIKELYGQDVAEAIRIQYGGSVNAANAAELFNMPNIDGGLVGGASLK 239          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.820e-44
Identity = 105/251 (41.83%), Postives = 146/251 (58.17%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVK-KGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            R+  V GNWK +GT   V ++   L  G                 F+  V   L+  G  V AQN  V+ + GA TGE++   L  +   +V++GHSERR ++ E  E +  K A A   GL  + C+GETLE+REAG T+EVV  Q  ++ D   +++++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A  + E+A   +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTQGL--GNMLIPEGIEVAVFPPALFINEVIDGLKGKGITVGAQNSAVQPEQGALTGEVAPSQLAEVGCKFVLIGHSERRQVIGESEEVLNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAKDA-EVAQNVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.820e-44
Identity = 111/254 (43.70%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSS-LRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 777
            R+  V GNWK NG +  V ++++ +  G                 F+ + ++S +  G  V   AQN      GAFTGEISA ML        I+GHSERRL+  E NE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L+A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S  +
Sbjct:    2 RRPLVVGNWKMNGRSASVARLLNDILAG----IGDCKAEVGVCVPFVYIPQASEILKGTKVMLGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.282e-43
Identity = 108/251 (43.03%), Postives = 147/251 (58.57%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVK-KGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            R+  V GNWK +GT   V ++   L+                   F+  V   L      V AQN  V+ + GA TGE++ E LV      V++GHSERR ++ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTEGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.282e-43
Identity = 110/251 (43.82%), Postives = 142/251 (56.57%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 774
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P  F+ ++++ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEPASFLGLLEAVK 251          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.675e-43
Identity = 109/248 (43.95%), Postives = 143/248 (57.66%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                ++ L K +   G H+   AQN  +   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  + EAG T EV A Q   +      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAA-GSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDTVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALEP5.757e-4444.35Triosephosphate isomerase OS=Salmonella enteritidi... [more]
TPIS_SALDC5.757e-4444.35Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH5.757e-4444.35Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA45.757e-4444.35Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_CLOTH7.519e-4444.58Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_PSEPW9.820e-4441.83Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_METCA9.820e-4443.70Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_PSEPG1.282e-4343.03Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_BACC11.282e-4343.82Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_SALTI1.675e-4343.95Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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