CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187770_ssr5 microsatellite CN187770_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:44..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 253.447 bits (646), Expect = 1.078e-66
Identity = 129/245 (52.65%), Postives = 160/245 (65.31%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 762
            M RKFFVGGN+K NG+ E +K I+  LN  +                +L   +  ++    V AQN + KK GA+TGE SA+ L++  I + + GHSERR I  E +EFV DK  +AL QGL V+AC+GETL +REA  T+ VV  Q  AIAD+V +WS IV+AYEPVWAIGTGK ATP QAQEVH E+RKW        +A   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNM-YLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.127e-66
Identity = 131/249 (52.61%), Postives = 163/249 (65.46%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M R+FFVGGN+K NGT E +  I+  LNE +                 L    +  +    V++QN + K  GAFTGEIS   L + +IPW I+GHSERR+IL E +EF+  KV  A+  G+ VI C+GETLE+REA  T+EVV  Q  A A  ++   WS +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    SPE +  TRIIYGGSV+  NC+ELA + DVDGFLVGGASLKP F+DII +
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLKPAFVDIINA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 1.192e-65
Identity = 130/249 (52.21%), Postives = 166/249 (66.67%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M RKFFVGGN+K NGT + +  I++ LN  +                +L L +        V+AQN + K  GAFTGE+S E L + +I W + GHSERR++L E +EFV  K   A++ GL VI C+GE+LE+REAG T++VV  Q  A+A+ VS   W+ +V+AYEP+WAIGTGKVAT  QAQEVH  +RKWL    SPE A   R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAI--YLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 5.916e-65
Identity = 130/247 (52.63%), Postives = 159/247 (64.37%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M RKFFVGGNWK NG    V  IV+ LN                   +L   KS L+ G  VAAQNC+    GAFTGEIS  M+ +L + WVILGHSERR +  E +  + +K  +AL  G+KV+ C+GE LE+REAG T +V   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  QAQEVH  +R +L    SP +A ATRIIYGGSV   N  EL  +PD+DGFLVGGASLKP+F+ II +
Sbjct:    1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAP--YLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA 245          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.009e-64
Identity = 121/241 (50.21%), Postives = 163/241 (67.63%), Query Frame = 1
Query:   55 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLI--LNELNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            NWKCN +  ++ ++VS  N                   +L   + +LR  F  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR I  L E +  +  K AYAL    L VI C+GE LE+RE+G T+ V   Q +A++D +S WS++V+AYEPVWAIGTGKVATP QA++VH  +R WL  N SP++AA+TRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.936e-64
Identity = 129/239 (53.97%), Postives = 164/239 (68.62%), Query Frame = 1
Query:   55 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 762
            NWKCNGTT  ++K+V V NE                   + LV++ LR P + ++A+N  + K GAFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  QG  VIAC+GETL+QREA  T +VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVATP QAQEVH  LRKW+  N   ++AA  RI+YGGSVN AN   L A+PD++GFLVGGASLKPEF DII
Sbjct:   12 NWKCNGTTASIEKLVQVFNE--HTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDII 247          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 128/247 (51.82%), Postives = 159/247 (64.37%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M R+FFVGGN+K NGT E V KIV  LN+ +                 L  V  + +    V+AQNC+ K  GA+TGEIS E + +L   W + GHSERR I+ E ++F+  K  +AL QGL VI C+GETLE+R+A  T++V A Q  A+A  VS WS IV+AYEPVWAIGTG  ATP  AQE H  +R+ L  +   + A  TRI+YGGSVNG N  E   + DVDGFLVGGASLKPEF+DIIKS
Sbjct:    1 MARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALA-VNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFLVGGASLKPEFVDIIKS 246          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.486e-63
Identity = 129/250 (51.60%), Postives = 164/250 (65.60%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTT-EEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M R FFVGGNWK N T+    K +V  LN+                  +L  ++        VAAQN + K+ GAFTGEIS + + +  IP+VILGHSERR + +E +E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+L    SP++A+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPAL--YLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.246e-63
Identity = 127/250 (50.80%), Postives = 153/250 (61.20%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M RK FVGGNWK NG+   +      L +                  +L   +     G  +AA+NC+    GAFTGEIS EM+ +    WVILGHSERR I  E NE +G+KV +AL  GL VI C+GE L +REAG T +V  AQ  AIA  V S   W  +V+AYEPVWAIGTGK ATPAQAQEVH  +R W+  +    IA   RI+YGGSV  +N K+L  QPDVDGFLVGGASLKP+FI II +
Sbjct:    1 MTRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPAC--YLKYAQDKAPKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLKPDFITIINA 248          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.537e-63
Identity = 124/249 (49.80%), Postives = 161/249 (64.66%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXX--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 768
            M R FFVGGN+K NGT   +K+IV  LN  +                   + LVK S      V AQN ++K  GAFTGE S + + ++   WVILGHSERR    E ++ + +K A+ALSQG+ VI C+GETL+Q++AG+T++VV  Q +A+ D+V  WSN+V+AYEPVWAIGTG  ATP  AQE+H  +R++L      + A  TRI+YGGS NG N      +PDVDGFLVGGASLKPEF+DII S
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKSQ---VSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SCHPO1.078e-6652.65Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_ASPOR9.127e-6652.61Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_PARBA1.192e-6552.21Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_CAEEL5.916e-6552.63Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_GRAVE1.009e-6450.21Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_LEIME2.936e-6453.97Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_DEBHA3.835e-6451.82Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_COPC72.486e-6351.60Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_TAESO3.246e-6350.80Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_ZYGBA5.537e-6349.80Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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