CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_HYPNA (Triosephosphate isomerase OS=Hyphomonas neptunium (strain ATCC 15444) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.518e-36
Identity = 91/243 (37.45%), Postives = 127/243 (52.26%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            + GNWK NG    + ++  V  E                         S   G  +  + C   + GA TG+++AEML +    +VI+GHSERR    E +  V  + + AL  G+  I CVGETL+QR+AG  + V+  Q        +  + IV+AYEPVWAIGTG+VAT  Q  EVH  +R  LL     +    TRI+YGGS+N  N  E+ A  +V+G L+GGASLK  +F+ I + A
Sbjct:    6 IAGNWKMNGLMANLAEVERVAAEVPASSEGAETLLCLPATLIHAGSAKSEGSGLKIGGETCHANEKGAHTGDLAAEMLKDAGASYVIVGHSERRADHGETDAVVAAQASAALRAGITPIICVGETLDQRDAGEVLTVITTQMAESIPEGAEAAAIVIAYEPVWAIGTGRVATSEQIAEVHTSIRN-LLVRRFGDAGRTTRILYGGSMNPGNAAEILAVAEVNGGLIGGASLKAADFLAIYRLA 247          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.518e-36
Identity = 91/242 (37.60%), Postives = 138/242 (57.02%), Query Frame = 1
Query:   55 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 771
            NWK NG +  +K++ S +++ Q                ++  V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  E +E V  K+   +   +  + C+GE+L+ R++G   +V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  LLA    ++A   +I+YGGS+   N K++ + P+VDG L+GGASLK  EF +II  A
Sbjct:    8 NWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSV-YVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDEKLAKNIKIVYGGSLKAENAKDILSLPNVDGGLIGGASLKAVEFNEIINQA 247          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB3 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB307-0294) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.518e-36
Identity = 100/253 (39.53%), Postives = 140/253 (55.34%), Query Frame = 1
Query:   43 FVGGNWK-------CNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 768
            +V GNWK        N   EE K+++                           ++ + R  + VA     V   GA+TGE+SAE+L + +I +V++GHSERR I  +  E +  K+  AL+ G+ VI CVGE+LEQRE G   +VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTS--AGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 95/241 (39.42%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   37 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 95/241 (39.42%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   37 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 95/241 (39.42%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   37 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            K  + GNWK N T  E +  +   +    E                   L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKE--------NFGKNTMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_DICT6 (Triosephosphate isomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 98/251 (39.04%), Postives = 134/251 (53.39%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSV---LNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 768
            R+  +  NWK   T  E +  +     L++G                    L+K +      + AQN + +K GA+TGEIS  ML +L   +VI+GHSERR   +E NE +  K+  A + GL  I CVGE  E+RE G T EV+  Q +   + +   +   IV+AYEPVWAIGTG  A    A EV   +RK +      E++   RI YGGSVN  N  E  +Q ++DG LVGGASLKP+ F +I+KS
Sbjct:    2 RRKIIAANWKMYKTCAETESFIKEFIELSKGYEEKEIVICPPFTSLYVASKLLKDT---AIKLGAQNMFWEKEGAYTGEISPIMLKDLNCTYVIIGHSERRNYFSETNEMINKKIKSAFNYGLIPIFCVGEKWEERERGKTEEVITKQVREGLEGLEKENVEKIVIAYEPVWAIGTGHSAKGEDANEVAGLIRKIISEMYDTEVSQKIRIQYGGSVNPQNITEFLSQNEIDGALVGGASLKPQSFWNIVKS 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_DESDG (Triosephosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 94/248 (37.90%), Postives = 129/248 (52.02%), Query Frame = 1
Query:   37 KFFVGGNWKCNGTTEE--------VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW---SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            K  +  NWK   T +E        VK + +V ++ +                F G+       GF+  AQN +    GA+TGEIS  M+V+    W + GHSERR +L E + FVG K A+ L +GL V+ C+GETLE+RE G   +V+  Q       V +      + +AYEPVWAIGTGKVA  A+    H  +R  +L    P  A + RI+YGGSV   N   + +  +VDG LVGGASL+ E
Sbjct:    2 KKLMAANWKMYKTPQEAALTAGELVKAVGTVPDDREVLVFPPFVGLAQVAQAFSGVA------GFYCGAQNVYPADEGAYTGEISPGMIVSTGAAWALTGHSERRSVLGESSAFVGQKTAFCLEKGLNVVLCIGETLEEREGGQLEKVLRGQLSEGLSGVPAGIAPERLAIAYEPVWAIGTGKVAGTAEIAATHAVVR-GMLRELLPAAADSMRILYGGSVKPDNAAAIISLDNVDGVLVGGASLQAE 242          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTE (Triosephosphate isomerase OS=Clostridium tetani GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 97/241 (40.25%), Postives = 131/241 (54.36%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPGFH--VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK--AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            RK  + GNWK + T +E  K+V  L                    F+ L K   +  G +  V AQN + ++ GAFTGE+S  ML  L I +VI+GHSERR    E ++ V  K+  A    L  I CVGETL+++E G T EVV+ Q K      +      +V+AYEP+WAIGTGK AT  +A EV   +R  + +    ++A + RI YGGSV  +  KE  +  D+DG LVGGASLK
Sbjct:    8 RKAIIAGNWKMHNTIDESVKLVEEL----IPKVKEAECEVVVCPPFICLPKIREITEGTNIKVGAQNMYFEEKGAFTGEVSPLMLEKLNIDYVIIGHSERRQYFKETDQTVNKKLKAAFEHNLIPILCVGETLDEKENGVTEEVVSKQVKLGLFELKEEQVEKLVIAYEPIWAIGTGKTATSEEANEVIALIRSTVKSLYGDKVAESLRIQYGGSVKPSTIKEQMSMSDIDGALVGGASLK 244          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CLOPS (Triosephosphate isomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 96/234 (41.03%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 738
            + GNWK + T +E  K+V  L                     L  VK ++      V AQN   ++ GAFTGEI+  ML  + I +VI+GHSERR   NE +E    KV  A +  L  I C GETLEQRE G+T +V+ AQ  A  + ++      +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A+ D+DG LVGGASL
Sbjct:    6 IAGNWKMHYTIDEAVKLVEELKP--LVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASL 237          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HYPNA1.518e-3637.45Triosephosphate isomerase OS=Hyphomonas neptunium ... [more]
TPIS_FRATM1.518e-3637.60Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_ACIB31.518e-3639.53Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_MYCHY1.983e-3639.42Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ1.983e-3639.42Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH21.983e-3639.42Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_DICT61.983e-3639.04Triosephosphate isomerase OS=Dictyoglomus thermoph... [more]
TPIS_DESDG1.983e-3637.90Triosephosphate isomerase OS=Desulfovibrio desulfu... [more]
TPIS_CLOTE1.983e-3640.25Triosephosphate isomerase OS=Clostridium tetani GN... [more]
TPIS_CLOPS1.983e-3641.03Triosephosphate isomerase OS=Clostridium perfringe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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