CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187770_ssr5 microsatellite CN187770_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:44..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.401e-34
Identity = 96/246 (39.02%), Postives = 126/246 (51.22%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ +E    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.401e-34
Identity = 96/246 (39.02%), Postives = 126/246 (51.22%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ +E    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.401e-34
Identity = 96/246 (39.02%), Postives = 126/246 (51.22%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ +E    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.401e-34
Identity = 96/246 (39.02%), Postives = 124/246 (50.41%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 747
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR    E +E V  K   AL  GL  I C+GE LE REAG+ +E      +     +S+   +  V+AYEPVWAIGTG+VA+ A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQTVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.401e-34
Identity = 94/240 (39.17%), Postives = 121/240 (50.42%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            R   + GNWK N T +E  ++V  L                       L  VK S      V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE +E V  KV  A    L  I C GE+LE+RE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++DG LVGGASLK
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLK 238          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.212e-34
Identity = 85/245 (34.69%), Postives = 135/245 (55.10%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            + GNWK      E  + +  +N                    L ++  +  P   + AQN + +  GAFTGEIS   LV+L + +V+LGHSERR++  E ++ V  K+  AL   L  + C+GETLE +E   T E +  Q T+A+ D        I++AYEPVWAIGTGK A+P +A +   ++R+ +    S ++  + +I+YGGSV+  N + +  Q ++DG LVG ASL+  +F++  ++A
Sbjct:   10 IAGNWKMYKDKNEALEFIQKVNFS-IPNSKEVETIIFAQSTLLDVLVQNQGPNLKIGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.212e-34
Identity = 80/161 (49.69%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  244 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 720
            GA+TGE+SAE+L + +I +V++GHSERR    E    +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGSV   N  ELAA PD++G L
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_POLNS (Triosephosphate isomerase OS=Polynucleobacter necessarius (strain STIR1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 91/252 (36.11%), Postives = 131/252 (51.98%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEG-QXXXXXXXXXXXXXXXXFL----GLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 768
            R   V GNWK NG+    +  V  +  G +                +L     L+K        + AQ+      G +TGE++A ML       VI+GHSERR +  E++E +  K    L   +  + CVGET ++R +G   E+V +Q  K +        + ++AYEPVWAIGTGKVA+   AQ++H  +R   LA  + ++A+   I+YGGSV   N  EL A PD+DG LVGGASL P +F+ I K+
Sbjct:    2 RPLIVIGNWKMNGSLANNQDWVKTVARGMESGMPSGRKYAVCPPFPYLQQCADLIKGHSLAFLSLGAQDASAYGSGVYTGEVAAAMLKEFGCTCVIVGHSERRQMHQEVDEVIASKALQVLDNSMTPVICVGETADERNSGRAQEIVCSQVAKQVGVLQDRLVDCLIAYEPVWAIGTGKVASAQVAQDMHRAIR-LQLAEFNEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLSPQDFLAICKA 252          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 94/243 (38.68%), Postives = 124/243 (51.03%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 738
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  L   +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  +     Q +     +S     N+V+ YEPVWAIGTG+VA+ A AQEV   +RK L A  SP++A   R++YGGS+N  N  ++ AQ DVDG LVGGASL
Sbjct:    1 MSRKSLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDLGAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGLVGGASL 243          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIEC (Triosephosphate isomerase 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 92/246 (37.40%), Postives = 130/246 (52.85%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 774
            V GNWK NGT   + +I ++  EG                  L  V ++L     +A  AQ+C  K  GA TG+ISAEM+ +    +VI+GHSERR    E +  V  K   A +  L  I C+GET ++R AG  ++V+  Q  A     ++  N V+AYEP+WAIGTG   T    ++ H  +R  L++    E     R++YGGSV  AN  EL    +VDG L+GGASLK  +F+ I ++ E
Sbjct:    9 VAGNWKMNGTRASLDQIKAIA-EGVRPPLADKVEALICPPTTLLYVATALCTDSPLAIGAQDCHQKPSGAHTGDISAEMIADSFGTYVIVGHSERRTDHAETDHLVRAKAEAAFAAELTAIICIGETADERRAGQELDVIKRQLSASVPDAATAENTVIAYEPIWAIGTGVTPTSGDVEKAHAFMRAELVSRFGDE-GRKMRLLYGGSVKPANAGELLGIANVDGALIGGASLKAADFLAIYRAYE 252          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCSS5.401e-3439.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK5.401e-3439.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ5.401e-3439.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCGI5.401e-3439.02Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_CLOBK5.401e-3439.17Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_PHYAS9.212e-3434.69Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS3_RHIEC9.212e-3449.69Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_POLNS1.203e-3336.11Triosephosphate isomerase OS=Polynucleobacter nece... [more]
TPIS_MYCLE1.203e-3338.68Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS1_RHIEC1.203e-3337.40Triosephosphate isomerase 1 OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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