CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187770_ssr5 microsatellite CN187770_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:44..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.047e-53
Identity = 111/247 (44.94%), Postives = 154/247 (62.35%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 762
            R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+ VI CVGETL++R+A  TMEV  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I
Sbjct:    4 RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMI 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.043e-49
Identity = 117/252 (46.43%), Postives = 144/252 (57.14%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKK----IVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            RK  V GNWK N T  E  +    I+  L E                    G++  +   G H+AAQNC  +  GAFTGE+S  ML      +VI+GHSERR    + N  V  KV  ALS GL VI CVGETL++RE G T EVV  Q K   + V+   +IV+AYEPVWAIGTGK A+  QAQEVH  +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E F+ I+K+AE
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGT---GIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFVAIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.944e-49
Identity = 120/254 (47.24%), Postives = 146/254 (57.48%), Query Frame = 1
Query:   34 RKFFVGGNWKCN----GTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            RK FV GNWK N    G      +I+ +L +                     ++  S      +AAQNC+ +  GA+TGEISA ML N    +VILGHSERR   NE +E V  KV  ALS  L VI CVGETLEQRE+G T  VV  Q +  + D       ++V+AYEPVWAIGTGK ATP QAQEVH  +R  +      E+A   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSAE
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDES---AIKLAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSAE 252          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.259e-48
Identity = 116/249 (46.59%), Postives = 148/249 (59.44%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 771
            R+  V GNWK N T  E  ++ + + E                   L  V  ++   G  +AAQNC  +  GAFTGE+S  ML      +VILGHSERR +  E NE V  KV  AL++GL+VI CVGETL++REAG T ++V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  +N  EL A PD+DG L+GGASLK E F+ II++A
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFMAIIEAA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 112/238 (47.06%), Postives = 137/238 (57.56%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K+ GA+TGE+SA M+ +    +VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.032e-48
Identity = 112/238 (47.06%), Postives = 137/238 (57.56%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K+ GA+TGE+SA M+ +    +VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47
Identity = 110/241 (45.64%), Postives = 137/241 (56.85%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 741
            R+  + GNWK NGTT+    + + + +G                  L  V+  +   G  + AQN  V   GAFTGEIS EML ++   +VILGHSERR +  E NE V  KVA A   GL  I CVGETLEQREA  TM+V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R  L       +A A RI+YGGS+   N KEL  Q DVDG L+GGA+LK
Sbjct:    2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALK 242          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.114e-46
Identity = 113/250 (45.20%), Postives = 147/250 (58.80%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKG-GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            R+  V GNWK NGT   V +++      Q                   ++         V AQ+C ++ G GA TGE+SA+ LV+L   WV++GHSERRL+L E +E V  K A A + GLK + C+GETLE+REAG T+EVVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R   LA +   IA   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFRR-QALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRD-QLARSDRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.761e-46
Identity = 115/253 (45.45%), Postives = 142/253 (56.13%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            RK  V GNWK N T  E      ++ + L EG                 F  L +     G  +A  AQNC  +  GAFTGE+SA M+       VI GHSERR    E N  V  KV +ALS+GL+VI C GETLEQRE G T +VV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  +N KEL + P++DG L+GGASL   +F+ I+K+A
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEG------FTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNAADFVAIVKAA 248          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.151e-46
Identity = 105/252 (41.67%), Postives = 152/252 (60.32%), Query Frame = 1
Query:   28 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            M R   V GNWK NG     K +++ + +                  +L   +S++     + +QN   ++ GAFTGE+SA ML  +   +VI+GHSERR +  E +  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++ LA   P+IA + R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++AE
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF-LAKDDPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAAE 247          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA1.047e-5344.94Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_PROA22.043e-4946.43Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLT35.944e-4947.24Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_CHLP82.259e-4846.59Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_BACFR5.032e-4847.06Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN5.032e-4847.06Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_MAGSM1.121e-4745.64Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_PSEU52.114e-4645.20Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_CHLPD2.761e-4645.45Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_ALCBS6.151e-4641.67Triosephosphate isomerase OS=Alcanivorax borkumens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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