CN187770

Overview
NameCN187770
Unique NameCN187770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 1.515e-44
Identity = 108/250 (43.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query:   25 KMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI---ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 765
            K+ RK  + GNWK + T  E KK VS+L                       + +        + AQN + +  GAFTGEIS  ML  + + +VI+GHSERR I  E +EF+  KV   L +G+  I CVGETLE+RE G T  VV  Q +      D+  +   +V+AYEPVWAIGTG+VATP QAQEVH  +RK L      E A + RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  399 KITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEA-KRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.979e-44
Identity = 111/248 (44.76%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   46 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV--AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 774
            V GNWK NG+   V ++V+ L + +                +L L K +   G H+   AQN  V   GAFTGE SAEML ++   ++I+GHSERR    E +EF+  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    ++A    I YGGSVN +N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVTGCAVAIAPPDMYLDLAKHAA-DGSHIILGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.584e-44
Identity = 110/240 (45.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 744
            RK  + GNWK N T  E    V  + +GQ                FL  LV  +      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A        + V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLAEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAKAEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.375e-44
Identity = 110/251 (43.82%), Postives = 142/251 (56.57%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 774
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGSV   N KE  AQPD+DG LVGGASL+P  F+ ++++ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATQGTDLKVGAQNMHFEKNGAFTGEISPVALSDLKVSYVVLGHSERREMFAETDETVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPGNIKEYMAQPDIDGALVGGASLEPASFLGLLEAVK 251          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 111/251 (44.22%), Postives = 146/251 (58.17%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQNCWVKK-GGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            R+  V GNWK +GT   V ++++ L                    ++  V   L+     V AQN  V+   GA TGEI+   LV+     V++GHSERRLI+ E +  +  K A A + GLK + CVGETLEQREAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 108/251 (43.03%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEG--QXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 771
            R+  V GNWK NG+      +++ +  G                     GL+  +      + AQ+    + GA+TGE+S  ML   +  +VI+GHSERR    E NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGA---AIALGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACHK (Triosephosphate isomerase OS=Bacillus thuringiensis subsp. konkukian GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 110/240 (45.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 744
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACCZ (Triosephosphate isomerase OS=Bacillus cereus (strain ZK / E33L) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 110/240 (45.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 744
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACCR (Putative triosephosphate isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=tpiA PE=5 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 110/240 (45.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 744
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CN187770 vs. ExPASy Swiss-Prot
Match: TPIS_BACCE (Triosephosphate isomerase OS=Bacillus cereus GN=tpiA PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 110/240 (45.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   34 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 744
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++      V AQN   +K GAFTGEIS   L +L++ +V+LGHSERR +  E +E V  K   A   GL  I C GETLE+RE+G T ++VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
The following BLAST results are available for this feature:
BLAST of CN187770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKT_THEMA1.515e-4443.20Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_ENTCL1.979e-4444.76Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_BACWK2.584e-4445.83Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_BACCN3.375e-4443.82Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_PSEF54.408e-4444.22Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_JANMA4.408e-4443.03Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_BACHK4.408e-4445.83Triosephosphate isomerase OS=Bacillus thuringiensi... [more]
TPIS_BACCZ4.408e-4445.83Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACCR4.408e-4445.83Putative triosephosphate isomerase OS=Bacillus cer... [more]
TPIS_BACCE4.408e-4445.83Triosephosphate isomerase OS=Bacillus cereus GN=tp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187770 ID=CN187770; Name=CN187770; organism=Citrus sinensis; type=EST; length=817bp
AGGAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGG
CGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGA
GCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTT
GTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCC
TGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTT
TCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAAATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATTAAATGA
GTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGA
TTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATG
GAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTG
GTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGA
AGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAA
TGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCAT
CTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGC
CTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTC
ATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTTTATT
TCAAGCGCAGTTTGCTG
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