CN187769

Overview
NameCN187769
Unique NameCN187769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 77/172 (44.77%), Postives = 105/172 (61.05%), Query Frame = -1
Query:  200 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 712
            FTGEISA+ML +L + +VI+GHSERR I  E+ E + +K+  A    L  + CVGE+L + EA  T +V+  Q   +   V ++   ++AYEP+WAIGTGK AT   A++V     K +  N    I    R+IYGGSVN  N  EL  Q ++DG LVG ASL P EF+ I+
Sbjct:   77 FTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGESLSEFEANETEKVIIGQINEVKS-VLNFEKAIIAYEPIWAIGTGKTATAQIAEQV----CKLIKNNFGKNI----RVIYGGSVNSKNINELLLQKNIDGALVGKASLDPEEFVKIL 239          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = -1
Query:  197 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 709
            TG++SAEML +     +I+GHSERR    E +  V  K       GL  I CVGET +QR+AG T++++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L+   + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   79 TGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 77/174 (44.25%), Postives = 104/174 (59.77%), Query Frame = -1
Query:  200 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMEVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 709
            T EIS  ML+   + +VILGHSE R  L + +E +  K+   L    K +I C+GETL +RE   T++VV  Q +   ++   S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:   76 TSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 77/172 (44.77%), Postives = 98/172 (56.98%), Query Frame = -1
Query:  200 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 712
            FTGEIS  ML  L + +VI+GHSERR    E +E V  ++A A   GL  I CVGE+ +QRE G T   +  Q       +    N+V+AYEP+WAIGTG+     +A  V   +R+ L     P       I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:   79 FTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGNAQLP-------ILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 75/168 (44.64%), Postives = 96/168 (57.14%), Query Frame = -1
Query:  215 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 712
            +TGEI+ +ML  L + +VI+GHSERR   NE +E V  KV  A    L  I C GE+LE+RE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:   73 YTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = -1
Query:  215 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 712
            FTGE+S + L++L +  V+LGHSERR    E ++ V  K+  AL   L    CVGE+L  +E   T   +  Q   I   V   +  NI++AYEPVWAIGTGK ATP  A +V  ++R  + A  S + + A RIIYGGSV+ AN K +  QP +DG L G ASL+ E
Sbjct:   77 FTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTE 244          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = -1
Query:  224 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS---NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 712
            +TGE+SA ML      +VI+GHSER     E N  + +K A A   G+  I CVGETL++RE+G     +A Q  A+   VS  +     V+AYEPVWAIGT + ATP QA+  H  +R+  +A   P  A + RIIYGGSVN  N  +L + PD+DG L+G  SL
Sbjct:   74 YTGEVSAAMLKEFGASYVIVGHSERSDAYCESNANIAEKFAIAKHYGITPIFCVGETLQERESGVMEYAIANQLDAVLS-VSGGALLDQAVIAYEPVWAIGTNRTATPEQARAAHSFIRE-RIAAMHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSL 237          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFT (Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tpiA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = -1
Query:  224 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 712
            +TGE+SA M+ ++   + ++GHSERR   +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:   73 YTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFM (Triosephosphate isomerase OS=Xylella fastidiosa (strain M12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = -1
Query:  224 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 712
            +TGE+SA M+ ++   + ++GHSERR   +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:   73 YTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFA (Triosephosphate isomerase OS=Xylella fastidiosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = -1
Query:  224 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 712
            +TGE+SA M+ ++   + ++GHSERR   +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:   73 YTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
The following BLAST results are available for this feature:
BLAST of CN187769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCFL1.083e-2944.77Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_BRASB1.847e-2943.02Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_BORHD1.847e-2944.25Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_SYNJB2.413e-2944.77Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_CLOBL2.413e-2944.64Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_ONYPE3.151e-2944.64Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_METFK5.375e-2945.18Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_XYLFT7.020e-2944.24Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_XYLFM7.020e-2944.24Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_XYLFA7.020e-2944.24Triosephosphate isomerase OS=Xylella fastidiosa GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187769 ID=CN187769; Name=CN187769; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAACCAA
AAAGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATT
ATACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAA
ACTGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTG
ATGATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCC
GTCAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGG
ATCCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTT
GCAAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGG
AGTGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAA
CAATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCA
GCAACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACC
AACACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTAT
CCCCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGA
CCAAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAAT
CTCACCGGTGAA
back to top