CN187769

Overview
NameCN187769
Unique NameCN187769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:293..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 94/175 (53.71%), Postives = 120/175 (68.57%), Query Frame = -1
Query:  200 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 712
            +TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+ VI CVGETL++R+A  TMEV  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I
Sbjct:   75 WTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMI 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.903e-42
Identity = 99/178 (55.62%), Postives = 118/178 (66.29%), Query Frame = -1
Query:  188 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 712
            +TGEISA ML N    +VILGHSERR   NE +E V  KV  ALS  L VI CVGETLEQRE+G T  VV  Q +     +++    ++V+AYEPVWAIGTGK ATP QAQEVH  +R  +      E+A   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSAE
Sbjct:   75 YTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSAE 252          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.485e-42
Identity = 95/177 (53.67%), Postives = 117/177 (66.10%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 712
            +TGE+S  ML+     +VI+GHSERR    E NE V  K   ALS GL  I CVGETLEQREAG T EVV  Q  A+   +  +  + IV+AYEPVWAIGTGK ATP  AQEVH  LR+ L A  + + A   RI+YGGS+   N KEL A PD+DG L+GGA+LK  +F+ II++A
Sbjct:   73 YTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA-QAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALKAADFLAIIRAA 248          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.537e-42
Identity = 95/176 (53.98%), Postives = 120/176 (68.18%), Query Frame = -1
Query:  191 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 709
            TGE+SA+ LV+L   WV++GHSERRL+L E +E V  K A A + GLK + C+GETLE+REAG T+EVVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R   LA +   IA   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:   75 TGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRD-QLARSDRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 94/176 (53.41%), Postives = 114/176 (64.77%), Query Frame = -1
Query:  188 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 712
            FTGE+S  ML      +VI+GHSERR    + N  V  KV  ALS GL VI CVGETL++RE G T EVV  Q K   + V+   +IV+AYEPVWAIGTGK A+  QAQEVH  +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E F+ I+K+AE
Sbjct:   75 FTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFVAIVKAAE 250          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41
Identity = 96/176 (54.55%), Postives = 119/176 (67.61%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 712
            FTGE+S  ML      +VILGHSERR +  E NE V  KV  AL++GL+VI CVGETL++REAG T ++V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  +N  EL A PD+DG L+GGASLK E F+ II++A
Sbjct:   75 FTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFMAIIEAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 93/177 (52.54%), Postives = 115/177 (64.97%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 712
            +TGE+S  ML   +  +VI+GHSERR    E NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:   73 YTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 90/165 (54.55%), Postives = 110/165 (66.67%), Query Frame = -1
Query:  221 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 712
            +TGE+SA M+ +    +VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   75 YTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 90/165 (54.55%), Postives = 110/165 (66.67%), Query Frame = -1
Query:  221 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 712
            +TGE+SA M+ +    +VILGHSERR    E  E + DKV  AL+ GL  I C+GE LE+REA    EVVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   75 YTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.326e-40
Identity = 92/175 (52.57%), Postives = 113/175 (64.57%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 712
            FTGE+SA M+       VI GHSERR    E N  V  KV +ALS+GL+VI C GETLEQRE G T +VV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  +N KEL + P++DG L+GGASL   +F+ I+K+A
Sbjct:   74 FTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNAADFVAIVKAA 248          
The following BLAST results are available for this feature:
BLAST of CN187769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA6.320e-4653.71Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_CHLT31.903e-4255.62Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_HERAR2.485e-4253.67Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_PSEU55.537e-4253.98Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_PROA21.233e-4153.41Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP82.104e-4154.55Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_JANMA4.687e-4152.54Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_BACFR7.995e-4154.55Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN7.995e-4154.55Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_CHLPD2.326e-4052.57Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187769 ID=CN187769; Name=CN187769; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAACCAA
AAAGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATT
ATACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAA
ACTGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTG
ATGATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCC
GTCAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGG
ATCCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTT
GCAAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGG
AGTGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAA
CAATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCA
GCAACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACC
AACACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTAT
CCCCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGA
CCAAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAAT
CTCACCGGTGAA
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