CN187769

Overview
NameCN187769
Unique NameCN187769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:293..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.038e-40
Identity = 89/178 (50.00%), Postives = 123/178 (69.10%), Query Frame = -1
Query:  188 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 712
            FTGE+SA ML  +   +VI+GHSERR +  E +  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++ LA   P+IA + R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++AE
Sbjct:   71 FTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF-LAKDDPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAAE 247          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 92/179 (51.40%), Postives = 114/179 (63.69%), Query Frame = -1
Query:  185 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 712
            FTGEISA ML        I+GHSERRL+  E NE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L+A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S  +
Sbjct:   73 FTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 89/176 (50.57%), Postives = 118/176 (67.05%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 712
            +TGE+S  ML NL I +VI+GHSERR I  E +  V  KV  AL+ GL  I C+GE+  +R  G T  V++AQ + + D   +  + ++V+AYEPVWAIGTGK A+ A AQE H  +RK+ LA  + ++A    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA
Sbjct:   78 YTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKF-LAQQNEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSA 252          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = -1
Query:  191 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 709
            TGE++ E LV      V++GHSERR ++ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:   75 TGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.154e-39
Identity = 92/176 (52.27%), Postives = 117/176 (66.48%), Query Frame = -1
Query:  191 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 709
            TGEI+   LV+     V++GHSERRLI+ E +  +  K A A + GLK + CVGETLEQREAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:   75 TGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 91/168 (54.17%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  221 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 712
            FTGEIS EML ++   +VILGHSERR +  E NE V  KVA A   GL  I CVGETLEQREA  TM+V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R  L       +A A RI+YGGS+   N KEL  Q DVDG L+GGA+LK
Sbjct:   75 FTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALK 242          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = -1
Query:  191 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 709
            TGE++ E LV      V++GHSERR I+ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:   75 TGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = -1
Query:  191 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 709
            TGE++ E LV      V++GHSERR I+ E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:   75 TGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 86/165 (52.12%), Postives = 109/165 (66.06%), Query Frame = -1
Query:  221 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 712
            +TGE+SAEM+ +    +VILGHSERR   +E  E + +KV  AL+  LK I C+GE LE+REA    EVVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   75 YTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CN187769 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 89/175 (50.86%), Postives = 113/175 (64.57%), Query Frame = -1
Query:  191 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 712
            +TGE+SA+M  +++  WVILGHSERR +  E +E +  KV  A+  GL  I CVGETL  RE+G   EV   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR   +    P+IA   RI+YGGSV  +N KEL + PDVDG LVGGASL   EF+ II++A
Sbjct:   73 YTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRN-NIRKHFPQIADKIRILYGGSVKSSNAKELFSMPDVDGALVGGASLVSEEFVSIIEAA 246          
The following BLAST results are available for this feature:
BLAST of CN187769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ALCBS3.038e-4050.00Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_METCA3.968e-4051.40Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_COLP33.968e-4050.57Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_PSEPG6.768e-4050.00Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEF51.154e-3952.27Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_MAGSM1.508e-3954.17Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_PSEPK1.969e-3950.00Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP11.969e-3950.00Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_BACV82.572e-3952.12Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_HAHCH4.387e-3950.86Triosephosphate isomerase OS=Hahella chejuensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187769 ID=CN187769; Name=CN187769; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAACCAA
AAAGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATT
ATACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAA
ACTGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTG
ATGATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCC
GTCAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGG
ATCCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTT
GCAAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGG
AGTGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAA
CAATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCA
GCAACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACC
AACACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTAT
CCCCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGA
CCAAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAAT
CTCACCGGTGAA
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