CX675514

Overview
NameCX675514
Unique NameCX675514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.049e-18
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 257
            SDG+ FE+EE  A + QTI HM+E +C D VIP+ NVTS IL  VIEYC K HV+A       +  +++DLK WD +F++ DQ T+
Sbjct:   11 SDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKHHVDAA------NPCSDEDLKKWDKEFMEKDQYTI 90

HSP 2 Score: 27.335 bits (59), Expect = 2.049e-18
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:  263 LILAANYLNIKGLLDLTCQTVADMI 337
            L+ AA  L+IK LL L  QTVADM+
Sbjct:   93 LMNAAYDLHIKSLLALAYQTVADMV 117
[Close]
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.989e-16
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:   57 IKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLL 260
            IK M EDDCAD  IPLPNVTS IL  VIEYCKKHV          +S E+DLK WDA+F+K  + ++L
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVV---------ESKEEDLKKWDAEFMKKMEQSIL 61

HSP 2 Score: 31.187 bits (69), Expect = 3.989e-16
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:  260 DLILAANYLNIKGLLDLT 313
            D+++AANYLNI+ LLDLT
Sbjct:   63 DVMMAANYLNIQSLLDLT 80
The following BLAST results are available for this feature:
BLAST of CX675514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK7_ARATH2.049e-1850.00SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH3.989e-1657.35SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G03-N6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675514 ID=CX675514; Name=CX675514; organism=Citrus sinensis; type=EST; length=728bp
GTTCGGACGGTGAGACGTTCGAGGTGGAGGAGACGGTGGCCCTCGAGTCG
CAGACAATCAAGCACATGGTGGAGGACGACTGCGCCGACACCGTAATCCC
GCTGCCGAATGTGACGAGCACGATTCTCTCGAAGGTTATCGAGTACTGCA
AGAAGCACGTTGAGGCTGGGTCAGGGGACAAGAAGGACGACAAGTCGACC
GAGGATGATCTCAAGACCTGGGATGCAGACTTCGTCAAGGTTGATCAGAA
TACCCTCTTGACCTAATCTTGGCCGCCAATTACCTGAACATTAAGGGTTT
GCTGGACTTGACCTGCCAAACTGTTGCAGACATGATCAAGGGGAAGACTC
CAGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTCTCTCCCGAT
GAAGAAGAGGAGGTTCGGAGAGAGAACCAATGGGCATTCGAGTGAAGGAC
TGAAGTGATGAAGGCTCGGTAATTAATATTTGTGATAGGAATGTCGTTAT
AATGATAGTGGTCTTTTAGTATGTTGCCAGTAGGTGTCTAGTATTGAACA
TCAACATTTCCTTTTGTCGTGAACCTGTGAATGCTGCTCGATATAAATGT
CATTGAACCCTTGTCTATTGCATTATATCTTCGTTTCTTGTCTCGCAATG
CTCTTCTTTCCTGTAAATTATCTGAATTTGACCCTTTTTATACTTTAAAT
CTTCATTTTAGCTTTTAAGTTTAAAAAA
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