CK938560

Overview
NameCK938560
Unique NameCK938560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:1088..1747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 61/115 (53.04%), Postives = 86/115 (74.78%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K  +K  HP E R+ E  +IR+KYPDR+P+IVEKA ++ +PD+D++KYLVP+DLT GQF  ++RKRI L  E A+F FV N +PPT+A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.871e-32
Identity = 63/115 (54.78%), Postives = 88/115 (76.52%), Query Frame = 3
Query:   69 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            K ++K E+  E+R+AE  +IR KYPDRIPVIVEKA +S + D+DKKKYLVP+DLTVGQF +++RKRI+L  E A+F FV N++P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   75 SFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 413
            SFK ++ L+ R AES  I  KYP RIPVI EK  ++D+P I+KKK+LVP D++VGQF+Y++  R+ LS  KA+F+FV N LP TAA+M ++YE  KD+DGF+YM YS E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CK938560 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 63/123 (51.22%), Postives = 94/123 (76.42%), Query Frame = 3
Query:   60 AMAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS---AEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 416
            A+   SFK E+ LE+R+  S++IR +Y DR+P+IVE+A  SD+PDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP++ ++S+IY+ +KDEDGFLY+ YSGENTFG+
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGS 124          
The following BLAST results are available for this feature:
BLAST of CK938560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_XENLA7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN7.409e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL3_HUMAN3.442e-3253.04Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL5.871e-3254.78Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8I_ARATH7.667e-3256.64Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8L_DICDI1.446e-3051.22Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_C09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938560 ID=CK938560; Name=CK938560; organism=Citrus sinensis; type=EST; length=660bp
GGGGACACAATAATTTGTCTACTCTTGATCAGCAGAANNNGTAGAAAGAA
CAAGGAGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGA
AAGGAGGCAGGCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAA
TACCAGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGAC
AAAAAAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTA
TGTGGTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATAT
TTGTCAAGAACATTTTACCACCCACTGCTGCAATGATGTCTGCAATTTAT
GAGGAAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGA
GAACACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGAT
TAACTCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTT
TCAACTGAGGGAGCACTTGGAAAGCATGATCTTCCTGGACGCAGCCCCTT
CTTAAAGTTTGGATCTATTGTTACTCCTCTTTATCTTATTTGTTGCAGTA
AATATTCGTGATTTCATCCGAAATAGACAAAATCCCTTAAAAATAAAAAA
AATAAACTAA
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