CK938559

Overview
NameCK938559
Unique NameCK938559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_CAMJD (Transaldolase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tal PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.488e-21
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  407 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDA 853
            + L L++  + G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  + + NV IKIPAT      + E++  GISVN TLIFSL + ++  +A
Sbjct:   19 EFLNLLSHEINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKCFEA 163          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_HELPY (Transaldolase OS=Helicobacter pylori GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.806e-20
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 823
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VNVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAAKSIDEAKRLFKTLNRPNVMIKVPASESGIEVVSALTQASIPVNVTLVFS 155          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_HELPJ (Transaldolase OS=Helicobacter pylori J99 GN=tal PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.251e-20
Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  371 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 823
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESAFEVISALAQASIPINVTLVFS 155          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_HELPH (Transaldolase OS=Helicobacter pylori (strain HPAG1) GN=tal PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 823
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESGLEVISALAQASIPINVTLVFS 155          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_HELPS (Transaldolase OS=Helicobacter pylori (strain Shi470) GN=tal PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.392e-19
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  371 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 823
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VN TL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAPKSIDEAKRLFKTLNRPNVMIKVPASESGLEVVSALTKASIPVNATLVFS 155          
BLAST of CK938559 vs. ExPASy Swiss-Prot
Match: TAL_HELP2 (Transaldolase OS=Helicobacter pylori (strain P12) GN=tal PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.052e-19
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  371 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 823
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKNPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASTSGFEVISALAQASIPINVTLVFS 155          
The following BLAST results are available for this feature:
BLAST of CK938559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_CAMJD1.488e-2139.60Transaldolase OS=Campylobacter jejuni subsp. doyle... [more]
TAL_HELPY2.806e-2039.61Transaldolase OS=Helicobacter pylori GN=tal PE=3 S... [more]
TAL_HELPJ6.251e-2039.61Transaldolase OS=Helicobacter pylori J99 GN=tal PE... [more]
TAL_HELPH8.164e-2039.61Transaldolase OS=Helicobacter pylori (strain HPAG1... [more]
TAL_HELPS1.392e-1938.96Transaldolase OS=Helicobacter pylori (strain Shi47... [more]
TAL_HELP24.052e-1938.96Transaldolase OS=Helicobacter pylori (strain P12) ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_C08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938559 ID=CK938559; Name=CK938559; organism=Citrus sinensis; type=EST; length=860bp
GGGGGGTGGCATTGCGGTTTCTTCGTTTGTATCGTATTTGGTTGAAGCTT
ACAAATCGTCTCTCTTTATTTCTGAGTTTTTAGATTCAAGGATCAACGAG
TCTTTAATGGCGACCATTTTGAAGCTTACAAATCCAGCTGTTTCTTCATC
ATCTTTGAAACCCAAATCATCATCATCCTCACTGCCTAAATCTTTGATCA
GCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTG
ACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTC
CCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATC
TCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCC
GTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAG
CAACCCTGCGATTTTCCAGAAAGCAATATCTTCATCGAATGCTTACAATG
ATCAATTTAGGGAACTTGTACAATCTGGAAAAGATATTGAAGCTGCATAT
TGGGAACTTGTGATTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTC
AATCTATGATGAAACCGATGGCGGTGATGGCTATGTTTCTGTCGAAGTTT
CTCCCAGACTCGCTGATGATACCCAAGGGACCGTGGAGGCAGCAAAATGG
CTTCACAAAGTGGTTAATCGCCCCAATGTATACATAAAGATACCTGCCAC
AGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTCGCAGGGCATTAGTG
TCAATGTGACTCTCATATTCTCCCTGGCTAGATATGAAGAAGTCATTGAT
GCTTACTTGG
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