CN187764

Overview
NameCN187764
Unique NameCN187764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 314
            I   + + W   I KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + GA  + L++ +A
Sbjct:    4 IEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   48 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 326
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L+  I   LA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   72 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 320
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 3
Query:   54 SNETKQ-LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 323
            S ET + +V+ DF A WCGPC+ IAP L EL +++ + L  +K+DVDE +  A  + V ++PT + LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   60 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 323
            ++++LV+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA  K  L  TI K+L
Sbjct:   15 QSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 3
Query:   48 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 323
            Q+  E+   V+VDF A WCGPCR +AP + E+A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 3
Query:   63 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 323
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   48 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 302
            +K  +    VVVDF A+WCGPC+ IAP L +L++    + F KVDVDEL  VA    V AMPTF F K G+  ++V GA    +Q
Sbjct:   14 EKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   72 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 320
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   75 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 311
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
The following BLAST results are available for this feature:
BLAST of CN187764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TXL1_SCHPO1.287e-1438.46Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_EMENI1.681e-1443.01Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CHLMU2.195e-1445.24Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_BACSU2.195e-1445.16Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_CYAME2.867e-1444.94Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO1_SYNE72.867e-1444.68Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_CYACA3.744e-1441.57Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_PENCH4.890e-1447.06Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLPN4.890e-1446.43Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRXF_MESCR8.341e-1448.75Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187764 ID=CN187764; Name=CN187764; organism=Citrus sinensis; type=EST; length=547bp
CCTTTAAGATCTCGTGCCACACCGTTGAGGCCTGGAACCACCTTATCCAG
AAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATG
GTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAACTGGCCAAGA
AACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGT
GTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAA
AGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGC
AGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATA
ACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCT
ATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTG
TGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGT
CTTTACAATAATTTAATTTCATATTTGTTGTTGAACCTAATTTTGAT
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