CK938555

Overview
NameCK938555
Unique NameCK938555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938555_ssr134 microsatellite CK938555_ssr134:134..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2117 contig Csv1_Contig2117:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.126e-31
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  171 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            K+F +RG  L+ L++MS +EL +L  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METJA (30S ribosomal protein S19P OS=Methanocaldococcus jannaschii GN=rps19p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.126e-31
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 3
Query:  156 KKRTFKK---FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            KK+   K   F +RG  L+ L  M   E  KL  AR RR   RGL  +   L  K++KA+R    G++P  +RTH R+ +I P+M+G   GVYNGK F +V++ PEMIGHYL EFS++ KPV+HG PG+GAT SS F+P+K
Sbjct:   12 KKQVISKKIEFRYRGYTLEELQQMPLREFAKLLPARQRRTLLRGLTPQQKKLAMKIKKARRLLNKGKEPRIIRTHCRDFVITPDMVGLTFGVYNGKEFVEVKVTPEMIGHYLGEFSLTRKPVQHGAPGMGATRSSMFVPIK 152          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METKA (30S ribosomal protein S19P OS=Methanopyrus kandleri GN=rps19p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.921e-31
Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  159 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            ++ + +F +RG  L  L+ M  +E ++L  AR RR  +RGL  +   L++K+R+A+R    G+KP  +RTH R+MII+PEM+G  I VYNGK F +V+I+PEMIGHYL EF+ + K V+HG  GIGAT SS F+PLK
Sbjct:   15 EKEWVEFRYRGYTLGELMKMPIEEFIELLPARQRRSLKRGLPSRHKKLLRKVRRARRLLRRGKKPPVIRTHCRDMIILPEMVGLTIAVYNGKEFKEVKIEPEMIGHYLGEFAKTRKTVEHG--GIGATRSSLFVPLK 149          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.277e-31
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 3
Query:  171 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            K+F +RG   + LL+MS ++  KL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+M+I+PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTFEELLNMSLEDFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_SULTO (30S ribosomal protein S19P OS=Sulfolobus tokodaii GN=rps19p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.533e-31
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  168 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            +KKF +RG  LD LL+M  DE +KL  +R RR  ++G   K   L++K+RK  RE   G+  + ++TH+R+MII+PEM+G    VYNGK F + ++ PEMIGHYL EFSI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLDELLNMPMDEFIKLLPSRQRRSLKKGFSDKQRRLLEKIRKYVRE---GKYSKTIKTHVRDMIILPEMVGLKFAVYNGKEFVEFQVVPEMIGHYLGEFSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.774e-30
Identity = 70/134 (52.24%), Postives = 91/134 (67.91%), Query Frame = 3
Query:  168 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            +KKF +RG  L+ LL+M  DE + L  AR RR  +RGL    + L+ K+RK +++   G+K   ++TH+R+MII+PEMIG  I VYNGK F  V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK
Sbjct:   11 WKKFRYRGKTLEELLNMPMDEFIGLLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.774e-30
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  171 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            K+F +RG  L+ L +M  D+++KLF +R RR  +RG   +   +++K+RK K+E     +P  +RTH R+MI++PEM+G   G++NGK F +V+I+PEMIG Y  EF+ + K V+HG PG+GAT  S F+PLK
Sbjct:    4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_SULAC (30S ribosomal protein S19P OS=Sulfolobus acidocaldarius GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.731e-30
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  168 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            +KKF +RG  L+ LL+M  DE +KL  +R RR  +RG   K   L++K+RK  RE   G++ + ++TH+RNM+I+PEM+G    VYNGK F + ++ PEMIG YL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEDLLNMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISRE---GKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHGEPGLKATKSSLFLAMK 139          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.179e-30
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  171 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            K F ++G  L+ L DMS +E+++LF AR RR  +RG   +   ++ K+RK  +E     +P  +RTH R+MI++PEM+G+  G+YNG+ F +V I+PEMIG Y  EF+ + + V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKYKGYTLEELQDMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.054e-29
Identity = 62/133 (46.62%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  171 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            K+F +RG   + L++MS ++L KL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+M+I+PEM+G +I V+NGK F  V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFKYRGYTFEELINMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133          
The following BLAST results are available for this feature:
BLAST of CK938555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PYRHO1.126e-3152.6330S ribosomal protein S19P OS=Pyrococcus horikoshi... [more]
RS19_METJA1.126e-3148.2330S ribosomal protein S19P OS=Methanocaldococcus j... [more]
RS19_METKA1.921e-3149.6430S ribosomal protein S19P OS=Methanopyrus kandler... [more]
RS19_THEON3.277e-3150.3830S ribosomal protein S19P OS=Thermococcus onnurin... [more]
RS19_SULTO9.533e-3149.2530S ribosomal protein S19P OS=Sulfolobus tokodaii ... [more]
RS19_STAMF2.774e-3052.2430S ribosomal protein S19P OS=Staphylothermus mari... [more]
RS19_METTH2.774e-3045.8630S ribosomal protein S19P OS=Methanobacterium the... [more]
RS19_SULAC4.731e-3047.7630S ribosomal protein S19P OS=Sulfolobus acidocald... [more]
RS19_METS36.179e-3045.8630S ribosomal protein S19P OS=Methanobrevibacter s... [more]
RS19_THESM1.054e-2946.6230S ribosomal protein S19P OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_C02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938555 ID=CK938555; Name=CK938555; organism=Citrus sinensis; type=EST; length=818bp
GGGGCTTCTTCTCCTCAGAAAAAACAAACCCTAGCGGCATCAGATCCAGC
GGGAGCCTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCT
AACCATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGAC
TGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTG
GACGCTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGC
ACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCCT
TGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAG
CCTGAACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAAT
GATTGGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTG
AAATCAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCA
TACAAGCCTGTGAAGCACGGTAGACCTGGTATTGGTGCTACCCATTCCTC
AAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAG
CTTATTGTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTT
ACATTTTTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTA
GATAATGGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATAT
GAGTGTATTCTTATGTCAGCCAAAAGTTGTGTTTGTTTCCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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