CK938555

Overview
NameCK938555
Unique NameCK938555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 54/140 (38.57%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  150 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          VRTH R++II+PEMIG  I ++NGK F  V+++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------VRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 50/140 (35.71%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  150 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            LPK++  ++F++RG+ +  +  +  +++  L  AR RR+ +R    +   L+  ++  + +         ++THLR+MII+PEM+G    ++NGK +  VE  PEM+GHYL EF+++   V HG  GIGAT  S+++PLK
Sbjct:   12 LPKRK--EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140          
BLAST of CK938555 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  150 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            +PK+R  +++++ G +++ L  MS DEL+ +  + ARR+  RG  R    +  K+ +           + VRTH R+MII+PEM+G  + +Y+GK F  VEI  E + HY  EF+++ K V HG  GIGAT SS+++PLK
Sbjct:    9 MPKRR--EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIAEG----------DGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAGIGATKSSKYVPLK 136          
The following BLAST results are available for this feature:
BLAST of CK938555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METBF8.089e-2238.5730S ribosomal protein S19P OS=Methanosarcina barke... [more]
RS19_UNCMA1.056e-2135.7130S ribosomal protein S19P OS=Uncultured methanoge... [more]
RS19_METLZ1.056e-2139.2930S ribosomal protein S19P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_C02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938555 ID=CK938555; Name=CK938555; organism=Citrus sinensis; type=EST; length=818bp
GGGGCTTCTTCTCCTCAGAAAAAACAAACCCTAGCGGCATCAGATCCAGC
GGGAGCCTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCT
AACCATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGAC
TGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTG
GACGCTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGC
ACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCCT
TGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAG
CCTGAACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAAT
GATTGGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTG
AAATCAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCA
TACAAGCCTGTGAAGCACGGTAGACCTGGTATTGGTGCTACCCATTCCTC
AAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAG
CTTATTGTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTT
ACATTTTTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTA
GATAATGGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATAT
GAGTGTATTCTTATGTCAGCCAAAAGTTGTGTTTGTTTCCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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