EY649567

Overview
NameEY649567
Unique NameEY649567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   25 YPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   25 YPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   25 YPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++ ++ED FLYV YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY649567 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 441
            YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   25 YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of EY649567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE9.903e-3064.13Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN9.903e-3064.13Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN9.903e-3064.13Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB1.211e-2758.70Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT1.211e-2761.96Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT1.211e-2761.96Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE1.211e-2761.96Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN1.211e-2761.96Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN1.211e-2761.96Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR2.697e-2758.70Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-A11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649567 ID=EY649567; Name=EY649567; organism=Citrus sinensis; type=EST; length=677bp
CCACGCGTCCGGGTTAATCCAATCTTCTTTAATCAGCAACTGCACGACGA
CGATAGCTTCATTGTATATTATATATGATAATTAACGACAATGAGTAAAA
GCAACTTCAAGATTGAGCATGAATTCGAGAAAAGGCGTGCTGAGGCGGAA
AGAATTAGGGAGAAATACCCAGATAGAATTCCGGTGATAGTGGAAAAGGC
TGAGAGAAGTGATATTCCTACAATTGACAAGAAAAAATATTTAGTCCCTG
CTGACTTAACAGTGGGTCAGTTTGTGTATGTGATACGGAAGAGAATTAAA
CTGAGCGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTTCTCCCGCC
TACAGGAGCAATAATGTCTACCATATATGATGAAAAGAAGGATGAAGATG
GGTTTCTCTATGTTACTTACAGTGGTGAAAACACATTTGGATAGCATAAT
CTGCCGCTACCCTTTTTCCTCTACCAACGTTTCGTTTGTTAATCTACTCA
TCTTGAATTTAGTGTTTCTGTTTTCTGGCTTTGTGCCGGTCATAATCCGG
CTTCTTATTTACATGACCTTTTATGCTTGTATATAGCCGGTTCAAACTAT
GTGGTATCAGACTGATGATTGCGAATAATTTAAATTCGATGGAAGTGTGG
TATCAATCCCTCAAAAAAAAAAAAAAA
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